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11-4078-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7199677 [Map]; Strand: w
      • AT1G20740.1 - [+] show detail - Protein of unknown function (DUF833)
        Distance: -717; Region: promoter
    Flanking Genome Sequence: 11-4078-1 - 5-prime edge 
    GTGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCGTG TTAGTAAAAG TACTTTCTTT AACGTCTACA 
    TTTCAATTTT ACTCAGATTA GTAAAAGTAC TTTCTAACTG GTTCCATATA 
    CAAATGACTC AACCTTACTC AATCAACACT AGCTAGAGCC AATAGAATCG 
    GACTACCAAA GCTAATTAAG ACCAAAGAGT AGTTGGATTT GAGTTCTAAC 
    CTTGTGTGCT ACTAGTAAAC CACTTCTTGT ATTTTCTTAG TACAGTAAAA 
    ACAATTCTGA ATGGTTCCAC ATATACAAGA GTCCTCTTTA CTCCTTAGTC 
    CTTACTCAAT CAGCAAAAGG TGGAACAATT TGAGAAATGT TGAAACAATG 
    TGTCTTCCAT ATTACTTAGT ATAGCAAGTT TATGCTACTA GAAGCCACTA 
    TTTTTTTGTG GTTTTACATG CATGAATCCG TAAAAGTAAA TTAGAAACAC 
    ATAGACACGG CTTCTGGTGG TTAGTGAATG GAGGAGAGAA TATGTATGAT 
    GGTGACAGAA AACAGCAAAA GGTATAATAT CCAAAATTGG ATAAAGAAGC 
    TCTTAAGCGC GTTGGAATAC CTATGTTGGA AGAAGCTGAC AAGCAAAGGA 
    AAAAGCAGAG CACAGTGAAT CATCTTTCGG CTATAAAAAC AGAGAGGGGT 
    CACAACTCAA AATGACNACN NGAACACCNC AGAGCAAGAG ATTCAATAGC 
    AAAAAACTTT TACAATATTC TTTCAAAACA AAAATGGGGA TCGN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7204527 [Map]; Strand: w
      • AT1G20750.1 - [+] show detail - RAD3-like DNA-binding helicase protein
        Distance: 0; Region: exon23 (CDS)
    Flanking Genome Sequence: 11-4078-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTGGAGGACA GCTAAGGCCA ATATTTGTTG GTTATGTCGT GTTATTGATT 
    TGATATATGT TAAATGATCA ATGGTATTGC AACAGCCAGT CCATGTTCTA 
    GCTCGAAGTA TGAAGCTCTA GCCTAGAAAC AGGTCTGAGA TCTCTGAAGT 
    CTCCTGATCA ATTCTTAAAA CGGCATGTAT CTAATGCAAA TTTCAGAAGA 
    TCTCCTCTTG GAGCTGAATC ATCTGTAACT CCTGAGAGAT ATTCCATTGG 
    TGATACGCGT AATATGACTC TAGAAGCAGA GTCACCTTTG AACATGAGTG 
    TTAATTCACA TGTTTTGAAG AGAAGAAAGT TTACTACATC TCCAATCATC 
    ATTGACCTTG ACAGGAAATT CCACAAATCT AGTTTCTTAT ATGATGTGGC 
    ATAGTACAAT CTGGGATC

AT1G20740.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF833)
Computational Description
Protein of unknown function (DUF833); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF833 (InterPro:IPR008551); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF833) (TAIR:AT1G20730.1); Has 322 Blast hits to 322 proteins in 133 species: Archae - 0; Bacteria - 194; Metazoa - 18; Fungi - 2; Plants - 74; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G20750.1

Model type
Protein coding
Short Description
RAD3-like DNA-binding helicase protein
Computational Description
RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20720.1); Has 2571 Blast hits to 1958 proteins in 520 species: Archae - 146; Bacteria - 396; Metazoa - 797; Fungi - 439; Plants - 210; Viruses - 2; Other Eukaryotes - 581 (source: NCBI BLink).
Link
InterPro Scan - TAIR