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11-4548-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18149117 [Map]; Strand: w
      • AT3G48950.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-4548-1 - 3-prime edge 
    ACCTGGATTG ATACCGTCGG TGTTGGGAAC AGTGACGGGA GCAAGAACGG 
    TGACGGATTT GACAATGACG TTATTACAAT AGACAGGATG AATATTCCAC 
    GACGGAGAAT CGATCAATGT GATGTTCGAG ATTTGAATGT TTTTGGAGAA 
    CAAGATCTCG ATCAAGTACG GTCTTGTTAT TTTGAACTGC TTCTTCTTGA 
    ATTTGTCCCA CCAATACTGT CCCTGTCCGT TGATCGTTCC GTTGTTACCT 
    ATAATCAAGA AAACAATCAA AATAAGAATC GGAATATATG ATCAAGCATA 
    TCATGGTGTG ATATATTGCG TTGGAACTTA CCAGTGATAA CCACGTCGGT 
    TAGGTTTGTA CCGGAGATGA GACTGTTGAA TCTACCGGTT CCGGTTCCGT 
    CTCTTCCTTT CCCGTACGAT GGCAATGGAG CGATAACTGG CCATTCAGAT 
    TCATCCTGTT TATGTCAAGA ACGGATTTGG TTTTTGTAAA GACATATTAA 
    TTCGTTATAT AGGTCGAAAA CAAACCGGGT GCAATATTTA GATATGTGTA 
    TTAAATGTAC GAGGTGCTTT AGAAAAAATT CTAACGTCAA CGTCTCTACT 
    AGGCAAAATT TGATTCATTA GGAGTAGTTT GATTTGGTCA TCAGTATAGA 
    TTGTTATGGT ATATGAAACG TANAGACGTT TAATTCGGAT C

AT3G48950.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: central cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G23900.1); Has 4179 Blast hits to 4160 proteins in 504 species: Archae - 6; Bacteria - 1499; Metazoa - 14; Fungi - 1097; Plants - 1422; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).
Link
InterPro Scan - TAIR