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11-5287-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26524178 [Map]; Strand: c
      • AT5G66420.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP033271 (Inte...
        Distance: 0; Region: exon1 (CDS)
      • AT5G66420.2 - [+] show detail - LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EX...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-5287-1 - 5-prime edge 
    GTAGTCGGGA GGCTTGAGTT GTTTAGAAGC TCCCCAAGCG ATAACGGCAA 
    ATGTACTGTG GGCATAACTA TGTTTGGAGT GACAACTCCA TGTGTAAATG 
    CAGTCCAGGA GATATTAACA AGAGAAGGTT ATGAGACACT AGTGTTTCAT 
    GCCACTGGTG TTGGTGGCAG AGCAATGGAA TCTTTGGTTA AAGAAGGATT 
    TATACAGGTT TCTCTTTTTC TCTTCATTCA GATGAGATTT GTTATTATGA 
    TTTATGCAGT TAGTCTTAAT TTTTTGGTTG TGGTGTTGGT TACTTTTAAT 
    GTTTCCTCTA CCTGTTCTTT CCTTAGGGAG TAATGGATAT TACAACAACC 
    GAGGTTGCCG ACCATCTCGT TGGAGGGGTG ATGGCATGCG ATAGTTCCCG 
    TTTTGATATC ACCATAGAAA AAGGAATACC GTTGGTTTTA AGTGTAGGTG 
    CCTTAGATAT GGTGAACTTT GGTGGTAAAG ATACAATACC TTCTCATTTC 
    CAAACGAGAA AGATTCACGT CCACAACGAA CAGGTGAGGA ATCGTTACAA 
    AGATGTTACC ATGTTAAGTT GTCTTTACTA GTGGTATCTG TTCAAAGTGT 
    AACTGTTATT GACAGGTTTC TCTCATCCNA ACGACNGCNN AAGAGANTAA 
    NAAATTTGCN AGGGTTTATA GCANATAAAC TGAACAAATC ANCATCAAAG 
    TAAGGGTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26524294 [Map]; Strand: c
      • AT5G66420.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP033271 (Inte...
        Distance: 0; Region: exon1 (CDS)
      • AT5G66420.2 - [+] show detail - LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EX...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-5287-1 - 3-prime edge 
    CCGACTACCA TACCAGCAAA AGAAGCCCCA GCGTTTGAAA AGACCACCCT 
    GCTAACACTG TTGATACCAC AAACATCTAC TAAAGAAGGG ATCAAAACCA 
    AATCTGAGGT CCCAACATAA GGTTCAGTTT GACCACTGGC CACAGTGGAT 
    ACAATGACCT TAGGAATCCC AATAGGGAGA GACCTAAAAG CAGATGATAT 
    GAGCGATGTT CCTCCGCTTC CGCCAAGGCC TATAGCCCCA GCAAGAGAAT 
    TATCCTCAAA GGCTTGCCTA AGAAAATTCT CAAGACATTT GCTCATGACA 
    CCAACTGCCT CGCCTCTATC ATCCGGAAGT TTAACCGGTT TTTCCTCCTG 
    GTTCGATCCA ATGTAGCATG AGAGAACTTC TTCTCTTGTT ACAAACGCAA 
    AGTCTGCAAC ATTATCGATC TGCTTCTGAT CAGCACCCGC CGAAACATCC 
    ACAATCACAA CCTCAACCTG TTATTCCAAT AAAACGGCTC ACAAAAATAT 
    CAACCATTCA CAATCTTCCA GTTCTCCAGA AAACTTAAAA TTGAGTCAAA 
    TCCTTCATAT TTCGTAAAAT TGGTCAATAG TGATTCAGGT GAGTCTTTCT 
    TCGTCAGAGC TAATCTTACC TTGGAAGACG AGTTTTTGGA GAATGCGCCG 
    ATATTTGATC GCACTGATCC AGCAGGAATC GTAGCTCATC AAGCT

AT5G66420.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP033271 (InterPro:IPR008322), TIM-barrel signal transduction protein, predicted (InterPro:IPR009215); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66420.2

Model type
Protein coding
Computational Description
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP033271 (InterPro:IPR008322), TIM-barrel signal transduction protein, predicted (InterPro:IPR009215); Has 1232 Blast hits to 1230 proteins in 311 species: Archae - 18; Bacteria - 959; Metazoa - 1; Fungi - 84; Plants - 42; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).
Link
InterPro Scan - TAIR