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11-5466-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5987620 [Map]; Strand: w
      • AT1G17440.1 - [+] show detail - Transcription initiation factor TFIID subunit A
        Distance: 0; Region: exon1 (CDS)
      • AT1G17440.2 - [+] show detail - Transcription initiation factor TFIID subunit A
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-5466-1 - 5-prime edge 
    GTTGTTGAGA TGATGATGAA GGTAAAGGAG TAGAAGATGC AGGAGAAGGT 
    TCCATAGGAT TAGGAGATTG TAGAGATTTC GGTGACAGAG ACGATGAGGG 
    AATCGGTTCC GCCATTAGAA GAAACCCAGC CTGTGAAGAA GAAGAAGAAG 
    AAGAAGAAGG TGTATTATTT TGGTTGAGAG GGGTTTTGTC GATTTTTCTC 
    TCATGAAATC GTGTTTTAAT TTTTTTCCCA GAAGTTTATT GACCGATAAA 
    ATATGGTCTT CTCTTTTTTT TTTGTTNGTT NGTNGAATCA GTNCNGGGGA 
    AAAANAATNT GACCCGNCCC CNTCANTAAA TTTANCGGAA NATGATCNAA 
    AANATCCTTG TCCTGANCTG NGTTTCNTTN TTCCAAACTN TCNCNCAACN 
    GNTNTAACNN TTTTNGNNGG ATTNTNTCNT AANCCAANGC AATCANTTTT 
    TTNCNTTTTT TTNTNTTCAC CNTTTNTTNC NTCAANTCCN NCACCAAAAA 
    GTCAANCTGT TTCNTNCCNC AGGNGATGAA ACTAGNGNNC CCTNTTTTCC 
    CGTTTTTGGG GTTCCGGAAT TNTGTTTTAA ATTTTTCNCC CCANTGTTTT 
    TTAAAANTTT CCNCAAANGN GGACAAAAAA ANATTNCCTC CCCCCGTTGG 
    CAAAGGAAAC NGNNTCCCGT TNNGNNTTTN ATNCATTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5987504 [Map]; Strand: w
      • AT1G17440.1 - [+] show detail - Transcription initiation factor TFIID subunit A
        Distance: 0; Region: exon1 (CDS)
      • AT1G17440.2 - [+] show detail - Transcription initiation factor TFIID subunit A
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-5466-1 - 3-prime edge 
    TCAACAACAA CAACTCATGA CAGCTCCGAT TTCCAATTCT GTTAATTCCG 
    CTGCGTCTCC GGCGATGACT GTAACTACCA CCGAAGGTAT TGTAATTCAG 
    AACAATTCGC AACCTAACAT CTCCTCTCCC AACCCTACTT CTTCTAACCC 
    ACCAATCGGA GCTCAGATCC CGTCGCCTTC TCCTCTCTCT CACCCTTCTT 
    CATCTTTAGA TCAGCAAACA CAGACTCAGC AACTCGTTCA ACAAACTCAG 
    CAATTGCCTC AACAACAACA ACAGATTATG CAGCAAATCT CTTCATCTCC 
    GATTCCACAA TTATCGCCGC AACAGCAACA GATTCTGCAG CAACAACACA 
    TGACTTCACA GCAAATCCCA ATGTCGAGTT ACCAAATTGC TCAATCTCTT 
    CAGCGATCCC CTTCTCTTTC TCGCCTGAGC CAAATTCAGC AACAACAGCA 
    GCAGCAGCAT CAAGGTCAAT ACGGCAACGT GTTGAGACAG CAAGCTGGTT 
    TGTACGGAAC CATGAACTTT GGTGGCTCAG GTTCAGTTCA ACAGAGCCAG 
    CAGAATCAGC AGATGGTTAA CCCTAATATG TCCAGAGCAG GTTTAGTTGG 
    CCAAAGCGGT CACTTGCCTA TGCTTAACGG TGCTGCTGGA GCTGCTCAGA 
    TGAATATTCA ACCCCAATTA TTGGCTGCTT CGGTACCCCA TTCTTTACTT 
    TTACTNTCTT T

AT1G17440.1

Model type
Protein coding
Short Description
Transcription initiation factor TFIID subunit A
Curator Summary
Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12. The gene product is an EIN3-interacting TFIID transcription factor required for proper ethylene response, including ERF1 induction. Loss of function mutants show enhanced response to ethylene. Located in nucleus and expressed throughout the plant. Required for ERF1 expression.
Computational Description
ENHANCED ETHYLENE RESPONSE 4 (EER4); FUNCTIONS IN: transcription initiation factor activity, DNA binding; INVOLVED IN: regulation of ethylene mediated signaling pathway, jasmonic acid mediated signaling pathway, transcription initiation; LOCATED IN: nucleus, transcription factor TFIID complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TBP-associated factor 12 (TAIR:AT3G10070.1); Has 83508 Blast hits to 36935 proteins in 1541 species: Archae - 40; Bacteria - 5554; Metazoa - 31214; Fungi - 9645; Plants - 6795; Viruses - 322; Other Eukaryotes - 29938 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G17440.2

Model type
Protein coding
Short Description
Transcription initiation factor TFIID subunit A
Curator Summary
Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12. The gene product is an EIN3-interacting TFIID transcription factor required for proper ethylene response, including ERF1 induction. Loss of function mutants show enhanced response to ethylene. Located in nucleus and expressed throughout the plant. Required for ERF1 expression.
Computational Description
ENHANCED ETHYLENE RESPONSE 4 (EER4); FUNCTIONS IN: DNA binding, transcription initiation factor activity; INVOLVED IN: regulation of ethylene mediated signaling pathway, jasmonic acid mediated signaling pathway, transcription initiation; LOCATED IN: nucleus, transcription factor TFIID complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TBP-associated factor 12 (TAIR:AT3G10070.1); Has 83508 Blast hits to 36935 proteins in 1541 species: Archae - 40; Bacteria - 5554; Metazoa - 31214; Fungi - 9645; Plants - 6795; Viruses - 322; Other Eukaryotes - 29938 (source: NCBI BLink).
Link
InterPro Scan - TAIR