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11-5487-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 9763351 [Map]; Strand: c
      • AT3G26590.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 11-5487-1 - 5-prime edge 
    CCCAAAAGAA ACAAAATAAT GCTAAAAATC GACTGTCAAA TGTGTTTTTT 
    TGTTCATCAT TGTTTGTTTT CTTTAGTTGT AATATAAGAA AGGTAAATAT 
    ATATATATAT ATATATATAT ATGTACACNC CCNNGANATA TTTGNGAANA 
    NACNAGAGNG ACACAAGAGA NAGGAGACAC TNNCTATATA GGGGCCCTTG 
    GGNGAGCACA NATGNGACNG NGGCGCNNCC GNNATATATT NTGGNGTGTA 
    NAAAANTGNN GNNGGNGGAG AGAGTGTGCC NTTNTTNNNN CCCCCCNACT 
    CTNTATATTC CACACATNTT NTNANANGNG CNNCTTTNNA AAAAAAAATG 
    AGATNTTNNG AATTTGGGGA TNACCAGCGG GGGNGGNNGN CCACGCGCGC 
    CCTANAAAAA AAAAAAANAN NNNNNAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 9763467 [Map]; Strand: c
      • AT3G26590.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 11-5487-1 - 3-prime edge 
    CTTTTGGGTG TATAGGTTTG TATAACTACA AGTCTAAAAT TAAAATGTAG 
    CAGAAAAAAG GAATAAAACA AAAAGAATCA ACACTAATAC ATCAAATTAT 
    TTAACTTAAT CAGTAGCCAC TAGCTATGGG TTTCACCTGC CCAAGAAACA 
    AACGAATAAT TTAGTTGACA ATGATGAACG ATTAAGTCTA CTACGCACGA 
    CGAATTAGTG CTAATTCCTA GAGATTCTTG ATGATAACTT TTAAAATAAA 
    GAAACTGAAC CAATCAAATA ACGAATCTTA GAAACCTTAA ATGACTACAA 
    TAAAATGAAT ATGAACATGT AAAAAAATAC TTTAAAACAT AAATTTACCA 
    GATGGAGAGG GCAGCTACAG AGATTTCAGC ATTCTTCAAA TATCCAGCAA 
    ATAATATGAT TGCCATAAAA TACCAAACCT CCAAACTGAT CCATAGTAAG 
    AAATTAATCA AAATAGCAAA AATATTATTA ATACTATATA AAAAAAACAA 
    AATCATCAAG TCAGGTTTGG TTTGGTTATA TAAACTCACC AGAGCATAAC 
    AGCAGAAGCC AAAGATAATC TAACGAAACT CCACAAATTA TGAAAAGCCT 
    CCCACGAGAA ACCAGACCAA GCCTCACCAC ACGTACCACT AAATATGTAC 
    ACAAGCTGAG CCNTGTCAAT GAAGCACCAC GACGCGTTAA GCACTACGGC 
    TAGACCTGGC ATACCC

AT3G26590.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G38030.1); Has 11119 Blast hits to 11024 proteins in 1994 species: Archae - 242; Bacteria - 8025; Metazoa - 141; Fungi - 326; Plants - 1364; Viruses - 0; Other Eukaryotes - 1021 (source: NCBI BLink).
Link
InterPro Scan - TAIR