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11-5896-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25629568 [Map]; Strand: w
      • AT5G64040.1 - [+] show detail - photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, p...
        Distance: -51; Region: promoter
      • AT5G64040.2 - [+] show detail - photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, p...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-5896-1 - 5-prime edge 
    GTATTAGAGA TGAATGAGGA TGATGATGAT GACGTGGACT AAGATGTAAT 
    AAGGGATTGT GGTTGGAGTG TGGATAAGGT GAGATTTCCC TTCAGTCCTA 
    TTGGCAAAAG TCCAAACCTT TTCTTATTAC TCAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25629452 [Map]; Strand: w
      • AT5G64040.1 - [+] show detail - photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, p...
        Distance: 0; Region: exon1 (5UTR)
      • AT5G64040.2 - [+] show detail - photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, p...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-5896-1 - 3-prime edge 
    TCTAATACTA AAATCTAATC TCTTCCTTGC TCACTCACCA ATCAAACTCA 
    AAAAACTCTT GAATTTTTCA AGAACAAAAG AAAAAGACAT CTTTAATGGC 
    GGCCATGAAC TCGAGTGTTC TCACTTGCAG CTACGCAATT GCTGGCTCTG 
    GCTCGGTAGA GCTTAACCAG AAAGTTGGTT TGGTGAATT

AT5G64040.1

Model type
Protein coding
Short Description
photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)
Curator Summary
Encodes the only subunit of photosystem I located entirely in the thylakoid lumen. May be involved in the interaction between plastocyanin and the photosystem I complex.
Computational Description
PSAN; FUNCTIONS IN: calmodulin binding; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G64040.2

Model type
Protein coding
Short Description
photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)
Curator Summary
Encodes the only subunit of photosystem I located entirely in the thylakoid lumen. May be involved in the interaction between plastocyanin and the photosystem I complex.
Computational Description
PSAN; FUNCTIONS IN: calmodulin binding; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, photosystem I, chloroplast thylakoid lumen, chloroplast, chloroplast photosystem I; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR