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11-5928-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 718637 [Map]; Strand: c
      • AT5G03060.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -623; Region: promoter
      • AT5G03070.1 - [+] show detail - importin alpha isoform 9
        Distance: 0; Region: intron10 (CDS)
    Flanking Genome Sequence: 11-5928-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA GGATAGGTTT TAAGAGGAAT GCCAAACGGG 
    GAAGGGCCAA AGCTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 718639 [Map]; Strand: c
      • AT5G03060.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -625; Region: promoter
      • AT5G03070.1 - [+] show detail - importin alpha isoform 9
        Distance: 0; Region: intron10 (CDS)
    Flanking Genome Sequence: 11-5928-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAT 
    CCACCAAAGA AATCAAAACC AATTAGGATC ATTCCTGTTC CAAATATGAC 
    TATGCGACAT CAACATATAA GCAAAACTCG TGTCTCATTG AGCTTTTAAG 
    AGCCATTAAA TTAGTTGCTT ACCAGCTCAA TGAACCTGAA GACCAAGCCT 
    AGCAGCTTCG ATATCAGGAG ATCTGACCAG CTCAATGAAA CCCCGGAGGC 
    AACCGCCACT GACAATAGAG ACTAAATGCT CTTGAATTAT CCCTGGTTTT 
    CTGTCTCCTT CTGCAGATTC TACACAGAGA TTTCCCAAGA CATAGGCAAC 
    TTCTTTCCTT ATATCAAAGG GGGATGTGGA AAGAATCCGT AGCAACAATG 
    GCATTACTTC AGTAGAATGT ATCATTCTCT TGTGTTCAAT AGATCCCGCC 
    GCTATATTAG ATAGCACCCA AACAGCTTCC TACAGAATCG AGTATAGTGA 
    TGAAAGCT

AT5G03060.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11100.2); Has 14506 Blast hits to 10808 proteins in 1083 species: Archae - 280; Bacteria - 2737; Metazoa - 4707; Fungi - 940; Plants - 571; Viruses - 106; Other Eukaryotes - 5165 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G03070.1

Model type
Protein coding
Short Description
importin alpha isoform 9
Curator Summary
Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.
Computational Description
importin alpha isoform 9 (IMPA-9); FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 6 (TAIR:AT1G02690.2); Has 2139 Blast hits to 1862 proteins in 255 species: Archae - 0; Bacteria - 2; Metazoa - 1001; Fungi - 275; Plants - 485; Viruses - 0; Other Eukaryotes - 376 (source: NCBI BLink).
Link
InterPro Scan - TAIR