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11-6129-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30012225 [Map]; Strand: c
      • AT1G79750.1 - [+] show detail - NADP-malic enzyme 4
        Distance: -832; Region: promoter
      • AT1G79760.1 - [+] show detail - downstream target of AGL15-4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-6129-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATATTG AGAAGGAATG TGTGCTTGGG GAAGACTTTA 
    TCGGGCAATA CAAGATTTGG GACTCGACCA CACTTGTCCA GGAACTCCGA 
    GAGGACGTCT TCGTTGGCCG TGAAGGAGGC ACAGGCGGCT GGATGCTACC 
    NGGGGACNGG AGGAGGGGCT CGGAAGTCGG GAGAGGAAAC TCCCATTTTT 
    GTTTGGGGTC TTACTCGTGA TAATACTTGT ATATATGTAG AGCAAGGATC 
    GATCATTGGC CAAAGAAAAA GTTTTTGTTA AATAAAGCGA GAGCATAATG 
    ATGAGATGCA ATTCTCTTGT TTGCTTTTAT TCATTGCAAC TTTTCCTTTT 
    CCAAAAACCA GAGAGGATGA CACTATTCAT CATATTATGG ATGGACCCAA 
    GTTGGGCCTT AAGCGGCCTT TTGTTTACCC AATTGACGTG GATNACCANC 
    CCGGGCCGTN GACCACGCNT GCCCCTNTA

AT1G79750.1

Model type
Protein coding
Short Description
NADP-malic enzyme 4
Curator Summary
The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME4 is localized to chloroplasts. The gene is expressed throughout the whole plant and during embryogenesis and germination. A possible involvement in the fatty acid biosynthesis has been proposed.
Computational Description
NADP-malic enzyme 4 (NADP-ME4); CONTAINS InterPro DOMAIN/s: Malic enzyme, NAD-binding (InterPro:IPR012302), Malic oxidoreductase (InterPro:IPR001891), Malic enzyme, conserved site (InterPro:IPR015884), Malic enzyme, N-terminal (InterPro:IPR012301), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NADP-malic enzyme 3 (TAIR:AT5G25880.1); Has 9573 Blast hits to 9553 proteins in 2441 species: Archae - 143; Bacteria - 6332; Metazoa - 610; Fungi - 220; Plants - 473; Viruses - 0; Other Eukaryotes - 1795 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79760.1

Model type
Protein coding
Short Description
downstream target of AGL15-4
Curator Summary
Identified as target of the AGL15 binding motif CArG.
Computational Description
downstream target of AGL15-4 (DTA4); Has 56 Blast hits to 56 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR