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11-6611-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5821434 [Map]; Strand: w
      • AT4G09140.1 - [+] show detail - MUTL-homologue 1
        Distance: -397; Region: promoter
      • AT4G09143.1 - [+] show detail - pseudogene, type 2 peroxiredoxin -related, similar to type 2 peroxiredoxin, p...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-6611-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTA ATGAGCGGTG TCGTCGACTT TGATCCATCT 
    ATAGAGGTTA AAGGTCAACT TTTCATTCAC AATCAAGTGA GTATATCTAA 
    TATTTTCCAC TTTGAGGGTT TGTTGTTATG CATCTTGAAA GACGACGTTA 
    CTAGGGTTTT GGTTTGGAAT CCGTATTGGA GGCATACAAG GTGGATCAAC 
    CTCCGATATT CTCAACCTCC GAATGGATTT GATAGGTTTA GTTATGCTCT 
    TGGATACGAA GATAAGGAAT CTTGTCGTAC CTTTAAGTTC TTGAGGTTTC 
    TAGATTATTT CTACAATACA CCCGAAACAC AATTTTTTTG GTATGAAATC 
    TATGATTTTG ACTCGGGTTT ATGGACAACT CTTGATGTCA CTCCACACTG 
    GGGTGTACAT TGTTCTTCCA GTGGCGTTTC TATTAAGGGA AACACTTACT 
    GGTGTGCTAA AGAAAGGAGG TCACAGGGTC ACAAAGATCA CATTATCTGT 
    TTTGATTTTA CAAGANANAA ATTNNGGCCG NTTNTCCCTC TACCNNGCAN 
    NGCTGNANAT GTGACTTTAT CTTGTGTTNN NNAANANAAG CTNNANNNNN 
    GGCCNNNNAC CNCCCNNCCC C

AT4G09140.1

Model type
Protein coding
Short Description
MUTL-homologue 1
Curator Summary
Encodes a protein with similarity to Mut1 DNA mismatch repair protein, from E.coli. The protein is expressed during prophase I of meiosis, colocalizes with MLH3 throughout pachytene and is dependent on MLH3 for proper localization.
Computational Description
MUTL-homologue 1 (MLH1); FUNCTIONS IN: protein binding, bridging; INVOLVED IN: in 6 processes; LOCATED IN: nuclear chromatin; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein Mlh1 (InterPro:IPR011186), DNA mismatch repair, conserved site (InterPro:IPR014762), ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA mismatch repair protein, C-terminal (InterPro:IPR013507), DNA mismatch repair protein, N-terminal (InterPro:IPR014763), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), DNA mismatch repair protein (InterPro:IPR002099), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: DNA mismatch repair protein, putative (TAIR:AT4G02460.1); Has 6802 Blast hits to 6727 proteins in 2342 species: Archae - 68; Bacteria - 4480; Metazoa - 469; Fungi - 496; Plants - 114; Viruses - 0; Other Eukaryotes - 1175 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G09143.1

Model type
Pseudogene
Computational Description
pseudogene, type 2 peroxiredoxin -related, similar to type 2 peroxiredoxin, putative
Link
InterPro Scan - TAIR