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11-6672-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17689920 [Map]; Strand: c
      • AT4G37640.1 - [+] show detail - calcium ATPase 2
        Distance: -2979; Region: intergenic
      • AT4G37650.1 - [+] show detail - GRAS family transcription factor
        Distance: -1866; Region: intergenic
    Flanking Genome Sequence: 11-6672-1 - 3-prime edge 
    TATACATAAA CCAGTAGACA TATGGATAAA TATGAACACA CACACCAAAA 
    AAGTGGGAAA TCTAAATAAG TGTAGAGAAT AATAAGTCCT CAGGTGGGAG 
    ATTCAAAGAG AGGACAATGA AGGGTATATA GACTCTAAAC AAAAATGGCA 
    TGACTTAGTG GAGAGGGTTT TAAATTGAAA CAAGTAGGAT TGAAGAACAA 
    GAAAACAAAG AAGCATGCCC TAGATTTCTG AGATAATAAT TACACATTGC 
    TGTTTATATA AGGTAAGAGA ATATGACACA TTGGTTGGTT TCTTACGGGT 
    AAATGTGAAG AAAAAAAAAT NGTAATATTT GAAAAAATCT AAAATAGNAA 
    AGAGGTNTNT NTGGAGAANA AGAGAGAAAN GGGAAAATTA NNGGCCNAAA 
    ANTGGNNANA GGTTNGGAGG CAANGGCACN NGNGNACCTT TGANNATNTT 
    GATGCANTCN GTCNACCACC CGTGCNCNTN NAGTGTTGAA ANTTTNTTNN 
    TCTCCCCCCN GTNNCTNTAG CTNCTTNTTT NNTATNGNNT NTNTTANNNC 
    TCCTTCCTTT TNNTTTTNTT TTTTNTTCTT TTTTTTNTCC CTTCCTGTNN 
    ANTCTTNTGN CTCNATNNNN TTNATTNANT NNNGAGNATT TTTNTCNCNT 
    TNCNTTNNNT TTGTANANNG CNNNCANTGT NTTATNTCCC TNATACGATN 
    NTCGTCNNGN TNTTTGAANN CTNNTTTGNN CNNTGNNNGN TTTTTGNGGT

AT4G37640.1

Model type
Protein coding
Short Description
calcium ATPase 2
Curator Summary
Encodes a calmodulin-regulated Ca(2+)-pump located in the endoplasmic reticulum. Belongs to plant 2B ATPase's with an N-terminal autoinhibitor.
Computational Description
calcium ATPase 2 (ACA2); FUNCTIONS IN: calcium-transporting ATPase activity, calmodulin binding, calcium ion transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: endoplasmic reticulum, plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: Cation transporter/ E1-E2 ATPase family protein (TAIR:AT2G22950.1); Has 47430 Blast hits to 34684 proteins in 3201 species: Archae - 904; Bacteria - 32793; Metazoa - 4036; Fungi - 2849; Plants - 2078; Viruses - 3; Other Eukaryotes - 4767 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37650.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Curator Summary
Involved in radial organization of the root and shoot axial organs. Essential for normal shoot gravitropism. The protein moves in a highly specific manner from the cells of the stele in which it is synthesized outward. Movement requires sequences within the GRAS and VHIID domains.
Computational Description
SHORT ROOT (SHR); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT3G49950.1); Has 2470 Blast hits to 2429 proteins in 304 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 15; Plants - 2427; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR