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11-6850-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30011411 [Map]; Strand: c
      • AT1G79750.1 - [+] show detail - NADP-malic enzyme 4
        Distance: -18; Region: promoter
      • AT1G79760.1 - [+] show detail - downstream target of AGL15-4
        Distance: -637; Region: promoter
    Flanking Genome Sequence: 11-6850-1 - 3-prime edge 
    CGGCCCTGGG AGAGAGTCTT CTTCTTCAGA ACCTCCATTG TTGACGTGTC 
    TTCTTCCTTT TCTATCTCTT CCCAAATTGC GTCTCCACTC CTTGGCTTCT 
    CCCTTTATTT ACCAATTTGC CATTGCTCAC CGGTCCCTGT ATTGGTACGC 
    NTTTTGTCAA TTTTAGCCCA CAAAATCTAA ATTATAACTT TTCGTTGACT 
    CTGACCTCTC TCTCTTATTT CTTTTCAATT GAAAATTGTG ACTCAAACTA 
    GCAAAAGGAC AGACAATTTC AAGCGAAAAT GCAACTACCA TCAATGTACT 
    GGTACTAAGT AGATTTAGTT GGTTTGGAAT TGGTATGAGA GAGATTCACC 
    ACTTGCCCTC TCTACTTGAC ATTTATTTTT TTATTTATGT GACAGAAAAG 
    GACTCTTCCA ACTTGGACTT GTGTCACACT CGATGCCCAT CCTGTGAGGA 
    TC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30011358 [Map]; Strand: c
      • AT1G79750.1 - [+] show detail - NADP-malic enzyme 4
        Distance: 0; Region: exon1 (5UTR)
      • AT1G79760.1 - [+] show detail - downstream target of AGL15-4
        Distance: -690; Region: promoter
    Flanking Genome Sequence: 11-6850-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCAGCAGA TTTAGAGCGT GTGAGGGAGA TAGGAAGAGA 
    GAAAGTGAGC GAGAGACGAT CACGGCCGCG CTGAAATCCA CGACCACGGC 
    CGCGCTGAAA TCCACAGACC ACGGCCGCTC TGAAGAAGAA GACTCTCTCC 
    GTCTCCTCCC TTCTCCTCCT CCGTCTAAGA GACAAGGCAT CCCCAGACGC 
    CATGATCTCT CTCACTCCCT CGTTGTTTCT GGTATTATTT ACATCATTCC 
    TTCTCCATCC ATCGTCCATG TCTCATCTTT TTTTATATAC GAAAAAGTCT 
    CATTGCTTTG GTTTCTCAGA ACAAGACGGT TGTTCCTGGA TGTTCCACAC 
    GCCTCTCTCT GCGCCAGCCT AGAACTATAA TTACTCCTCC TGCTTCCTTG 
    AGAGTCTTTT CCTCTCTCGG ATCTAACCAG GATC

AT1G79750.1

Model type
Protein coding
Short Description
NADP-malic enzyme 4
Curator Summary
The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME4 is localized to chloroplasts. The gene is expressed throughout the whole plant and during embryogenesis and germination. A possible involvement in the fatty acid biosynthesis has been proposed.
Computational Description
NADP-malic enzyme 4 (NADP-ME4); CONTAINS InterPro DOMAIN/s: Malic enzyme, NAD-binding (InterPro:IPR012302), Malic oxidoreductase (InterPro:IPR001891), Malic enzyme, conserved site (InterPro:IPR015884), Malic enzyme, N-terminal (InterPro:IPR012301), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NADP-malic enzyme 3 (TAIR:AT5G25880.1); Has 9573 Blast hits to 9553 proteins in 2441 species: Archae - 143; Bacteria - 6332; Metazoa - 610; Fungi - 220; Plants - 473; Viruses - 0; Other Eukaryotes - 1795 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79760.1

Model type
Protein coding
Short Description
downstream target of AGL15-4
Curator Summary
Identified as target of the AGL15 binding motif CArG.
Computational Description
downstream target of AGL15-4 (DTA4); Has 56 Blast hits to 56 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR