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12-0186-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 567659 [Map]; Strand: w
      • AT3G02645.1 - [+] show detail - Plant protein of unknown function (DUF247)
        Distance: 0; Region: exon1 (CDS)
      • AT3G02650.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -388; Region: promoter
    Flanking Genome Sequence: 12-0186-1 - 5-prime edge 
    CTCAAGAGTG ATCAAGAAGC TGCAGAGATG TGGAATGGTA TGAGCAAATC 
    TGTGAGGTTG ACCAAAGTTG GTTTTTTGGA TAAGACTATC GAGGATGTTA 
    ACCCGTTATT ATACCCGGAC GGTGGAAAGT GAAGATCGGA AGATTGGTTG 
    AGGTTTATGT TTATGGTTCT TGGCANATTC TANCGTTTTT GGCGGCGGTT 
    TTGTTGTTGA TGTTGGTTTC GTTGCAATTG TTCTCTTTGG TTTTTAGCTC 
    CTTCCTTCGG TTTANCGCCG GTTAGTTGAG AGATTCGAGT TCGTTCGCTA 
    TGGNTTTGTG TTATTTCTAT TTCACCTGGT TTGGTTTGAT TTGGTTTATG 
    TTGAACCATA TTGAAATTAC TGNGCTTTTG TGAAACATTT TGTAACAAAA 
    AGTCCTTCAT TTGATTCATT GCAATTAANA ATTAATTACT GNATCTCCTT 
    AAAGATCCGA ACTTTGCGAG ACAAAAANAG AGTANGGTTT TGGGTTTAAA 
    ATCANGAACT GCTGNTGAAN ATAGTCTCTG AGTGAGAAAN ATAGTNNAAA 
    TGTTGAGATC CTTTCTCNTN TANATCGCAA AAGCNNCTCG GAANCTCNCT 
    GTTACTCNAA TCTCNNAAAA AAANAACCAN ACNAACTCAT TCNCTTNNCT 
    CTNTTTTNAA AATTTCATNT NNCNANNCNN CNNGNAAATG CTNCNNNTNN 
    NAAAANNCN

AT3G02645.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF247)
Computational Description
Plant protein of unknown function (DUF247); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50150.1).
Link
InterPro Scan - TAIR

AT3G02650.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G62680.1); Has 34543 Blast hits to 12438 proteins in 283 species: Archae - 5; Bacteria - 31; Metazoa - 472; Fungi - 472; Plants - 32537; Viruses - 0; Other Eukaryotes - 1026 (source: NCBI BLink).
Link
InterPro Scan - TAIR