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12-3867-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5566528 [Map]; Strand: c
      • AT3G16400.1 - [+] show detail - nitrile specifier protein 1
        Distance: 0; Region: exon2 (CDS)
      • AT3G16400.2 - [+] show detail - nitrile specifier protein 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-3867-1 - 3-prime edge 
    CAGGTAATAC TCGTAAGATT TATCAACACA AGCAAAAAAG ATGGCCCAAA 
    AGCTAGAAGC AAAGGGTGGT GAGATGGGAG ATGTATGGGA TGATGGTGTT 
    TACGAAAATG TTAGAAAGGT ATATGTAGGG CAAGCACAAT ACNGGTATAG 
    CCTTCGTCAA GTTTGAGTAT GTCAATGGTT CTCAAGTGGT TGTTGGAGAT 
    GAACATGGAA AGAAGACAGA GCTAGGAGTT GAAGAGGTAC TAAAATAGAT 
    TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTNAAAAAA NNGNGNNNAA 
    AAAAANTTTT TTTTTTTNTT NNNNAAAAAN NNGGGGGGGT TTTTTTTTTT 
    TNNNTTNCCC CCCNAAAAAA AANTNNNNNT TTTTTTTNNN NNTNNAAAGN 
    GGGGGGGNNN NNNCCTTTTT TTTGNGGGGG GGNNNNNNNA AAAAAAAA

AT3G16400.1

Model type
Protein coding
Short Description
nitrile specifier protein 1
Curator Summary
Encodes a nitrile-specifier protein NSP1 responsible for constitutive and herbivore-induced simple nitrile formation in rosette leaves. NSP1 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.
Computational Description
nitrile specifier protein 1 (NSP1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glucosinolate catabolic process, response to herbivore, nitrile biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: rosette leaf, cotyledon, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Myrosinase-binding related, jacalin-like lectin (InterPro:IPR017388), Mannose-binding lectin (InterPro:IPR001229), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: nitrile specifier protein 4 (TAIR:AT3G16410.1); Has 12798 Blast hits to 6850 proteins in 422 species: Archae - 13; Bacteria - 486; Metazoa - 7547; Fungi - 708; Plants - 2515; Viruses - 41; Other Eukaryotes - 1488 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G16400.2

Model type
Protein coding
Short Description
nitrile specifier protein 1
Curator Summary
Encodes a nitrile-specifier protein NSP1 responsible for constitutive and herbivore-induced simple nitrile formation in rosette leaves. NSP1 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.
Computational Description
MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-470 (ATMLP-470); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: glucosinolate catabolic process, response to herbivore, nitrile biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: rosette leaf, cotyledon, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Myrosinase-binding related, jacalin-like lectin (InterPro:IPR017388), Mannose-binding lectin (InterPro:IPR001229), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: nitrile specifier protein 4 (TAIR:AT3G16410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR