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12-3896-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26494652 [Map]; Strand: c
      • AT1G70320.1 - [+] show detail - ubiquitin-protein ligase 2
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 12-3896-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTC TCAGAGTGAA GGTGAAAGGG GTTCTAGTCT 
    AACCCAGGCT ATGCTTCAGG AGATGAGGAT AGAGGGCGAT GAGACAATAC 
    TGCCTGAACC TATTCAGATG GATTTCTTTC GAGAAGAGAT TGAAGGTGAT 
    CAAATCGAAA TGAGTTTTCA TGTTGAAGAT AGGGCTGACG ATGATGTAGA 
    TGATGACATG GACGATGAAG GAGAGGATGA TGAAGGAGAT GATGAAGATG 
    CAGATTCAGT GGAAGATGGA GCTGGTGTTA TGTCTATTGC TGGAACTGAT 
    GTTGAAGACC CTGAAGATAC TGGCCTTGGA GATGAATATA ATGATGACAT 
    GGNTGATGAA NATGAGGAAG ATGAGGATGA ATNTNNTGAT NACNTGGNNG 
    NNGANNATNA NGNTNANNAN GNNNANNNT

AT1G70320.1

Model type
Protein coding
Short Description
ubiquitin-protein ligase 2
Curator Summary
encodes a ubiquitin-protein ligase-like protein containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.
Computational Description
ubiquitin-protein ligase 2 (UPL2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: cytosol, mitochondrion, ubiquitin ligase complex, nucleus; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), E3 ubiquitin ligase, domain of unknown function DUF913 (InterPro:IPR010314), HECT (InterPro:IPR000569), Armadillo-type fold (InterPro:IPR016024), Ubiquitin interacting motif (InterPro:IPR003903), E3 ubiquitin ligase, domain of unknown function DUF908 (InterPro:IPR010309), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 1 (TAIR:AT1G55860.2); Has 34660 Blast hits to 19733 proteins in 1213 species: Archae - 286; Bacteria - 8191; Metazoa - 9374; Fungi - 5439; Plants - 1788; Viruses - 520; Other Eukaryotes - 9062 (source: NCBI BLink).
Link
InterPro Scan - TAIR