1. Home
  2. Mutant Lines
  3. 12-4159-1

12-4159-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19854693 [Map]; Strand: c
      • AT1G53240.1 - [+] show detail - Lactate/malate dehydrogenase family protein
        Distance: 0; Region: exon7 (3UTR)
    Flanking Genome Sequence: 12-4159-1 - 5-prime edge 
    CNTGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC ATACTTTCTG TTTCTCAGAT ATTACTTTCT 
    TCTTTTTTGG GTTTAGTTTA AATTTCAGCC AAAAGTAAAA GAGATTTTTA 
    CAGATGTGAT CTTCATTGGC CTTTTACCAA AATAAACTCA AATTGAGAAG 
    CTAACAGTTT TGGAGGACTT GCATAGGTAG AGTTGATGTT AAATGGGTTC 
    CATTTGATTG ATCAGACGAG TTTATTTGCT TCTTTTCTCG CTGTCGAGTA 
    TAGTTTAGTT TTTTACTTTT GTTAAAAATA TGAGATTTCC AACATTAACC 
    GCTCCAAACC GATTTTACAT ATTTTGGTTC GGAGTAGTTG ATATGCCATG 
    GGCTCCCTTT CATCTTACAT TCAAAAGGTT AGAGAAAAGG TCTATACACT 
    TTCAGCCCAA ATCATCAAAA ACCAAAACTA GTTTGGTAAC CCAAGTTTCA 
    TCTTCTTTTT TGCCCTCTCT TTTCTTCTTT TGGTTATTGN GACTTTTATT 
    ACAATTTACT TTTACAGNAG TTACACAAAA GTAACAATAA TATTNNATTN 
    CTAGACAAAA AGGGTCCAGA AACCTGAATT AANGCATNGG NCTTTCACTT 
    NTTTTTTTTN ACATGGCNCA TNCNTTTTTN TNATCCNNGN NAACNTNNTN 
    NCTTNNNNGN NGNNNNNACN ANAANNGCAA NCNGNTTATT GGANNNNNNN 
    NNGGGNGNNG CCAGNCGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19854697 [Map]; Strand: c
      • AT1G53240.1 - [+] show detail - Lactate/malate dehydrogenase family protein
        Distance: 0; Region: exon7 (3UTR)
    Flanking Genome Sequence: 12-4159-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TCTGACACAG ACGCAGCATT AAAAAGGAAC CAACCCACAC TTATGATCTC 
    TTGTTCATGA AAAAAAAGTC GCATGGTTCC AAAAAGGAAG AAAGAATTAC 
    AACTTTGACA TGTTACAGTT TTTCTTTGAG TTTGGTGATT AACCAAAAAG 
    AGCCTTATGG TTTCACTAAT GGAGGCACAA ACATGGATTT TTTATTGATA 
    CAACCTGATG AAGGAGGAGG TGGCAACTCT AGCTGGAAAA TTGGAAAAAT 
    TACCGAGTAA ACTCGGTTTA ATCACTGGTT GGCAAACTTG ACTCCCTTTT 
    CTATGGAGGA CTTGAGTTCT GGCTTCAATG CTTCCAAGCC TTCCTTCTCA 
    AAGTCTGAGA GTGGTCCCAA GTCAAGAACC TCCTCCACAC CATTCTTCCC 
    CAACCTCACC TGAATAATAA TTAAACCCTC ATATTCATCA ACCGAGACAC 
    AAGACCATAG GACGTACATA CTGTGTTTGA TGTTAAGTTT TGAGGATTAC 
    CTTCGAGGCA AAGAAAGGAA GCTCGGTGAT TGTAGATTGC ACGTATGAGC 
    ATTCTATGAC ATCTGGAACA CCGTTGAGTC CTTTCAAGCA TGCATCAGCG 
    AACAATGCTC CGGCATAGCT GTGATTATCA GATTTAAGAA GTTAAGAAAT 
    CAAAAGTAGG ATC

AT1G53240.1

Model type
Protein coding
Short Description
Lactate/malate dehydrogenase family protein
Computational Description
Lactate/malate dehydrogenase family protein; FUNCTIONS IN: malate dehydrogenase activity, copper ion binding; INVOLVED IN: response to cadmium ion, response to salt stress, response to cold, defense response to bacterium, peptidyl-cysteine S-nitrosylation; LOCATED IN: mitochondrion, cell wall, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT3G15020.1); Has 17502 Blast hits to 17499 proteins in 5422 species: Archae - 240; Bacteria - 12205; Metazoa - 1281; Fungi - 536; Plants - 649; Viruses - 0; Other Eukaryotes - 2591 (source: NCBI BLink).
Link
InterPro Scan - TAIR