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12-4870-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21939093 [Map]; Strand: w
      • AT1G59710.1 - [+] show detail - Protein of unknown function (DUF569)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-4870-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG ATCACCACCA CCAGCACCTG CAGCTGCAGC 
    AACCTCCGTC GCCGCTTCAT CATTCTGATT CTCTTGATTT CACACCTGGA 
    TCTCCTTCCA GATCTGACCG TTTCTTTAGA CAAGAGGTGA TTTTTTTTTT 
    TTTGGNAANA NTTTTTGGGG NNNAAAATNC NNNANNTNNN NNTTTGGGGG 
    GGGGNANNAA AGGGNTNNCN GGGGGGGGGN NNCCCCCCCA AANNGGNNGG 
    GGNNNGGNNN NNCCCCCCTN GGGGGGGNNA AAAAAAAAAA NNTNAAAAAA 
    AACNTTNNGN NGGAAANTNC TTTACNTTNA AANGNAANGG GGGNNAAAAA 
    CCNCCNTTTA AAATNAAAAA AAAAAANNAT NGTAAAAAAN TTTNTCNTTG 
    GNCCCCGAAC CCCGNAAAAG GGNAANTTNC NACCCGGGGC NGNAAANNNC 
    CNGGGCCCTT NNAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21939048 [Map]; Strand: w
      • AT1G59710.1 - [+] show detail - Protein of unknown function (DUF569)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-4870-1 - 3-prime edge 
    GNTTGGCGGG GNGNGAACCC NAGANGNTNN GCTCGANNNC TNTANCGCGC 
    CANGAACCCA TNACTTGACC TGNCNATGAN NGANGACTAN TANGAGTNAC 
    AGGACNNTCA TACNAGGNGG NAAACTCANN GTTACCACNG AAGGAAGNTA 
    CACATAACGN AGTCTTGAGC TNAACCAAAG CANAATCTNT AATCGGTNCC 
    CAAGCTAAAG ACGAGTCATA GACGACTANG TTTAGTCTGT AGAACTTTTT 
    TTCCGGTGGC TCCNNGAANA ANCGGTTTAT TANACGCTGT TAAGTATTTG 
    CCATATGCGC TTTTGAGACG GATGAGATTT GNNGAGCCTG GGATTATCTC 
    AACGGTCCAT TTGGCTGCAC CTGCTGAGCC GTTACGTTCT TGANTTACAG 
    ATNCTTCGTC TTCATCGGCG ACTAGGTNCT TGTCGTGATG GCCTCCGTAN 
    ACGAACGGNA TTTGGCCTTT TGAAAAATCT CCATTGTTTA GAGANANAGA 
    TGGTGCTGAA TGTTTNNGAA GGTNACTNNC TGAATGCAGA GAGCTGGACT 
    TGAGCTGGGT CTTTGGGACC TNGTCTTTTT TTACATAGNA NGGGNATTNN 
    ANTATTANNN NANATTANNN TTNCGTCATT NTNCNTGTNC TTTCTTTTTT 
    TGGAGANTGA GANGNGNTNT ANGACNTTTT NGCGAATGNT NANTTCTTTN 
    TANANANANG CNTTCTANGT TTTNNNNANN AGTNAAANAA TNAAT

AT1G59710.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF569)
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: Actin cross-linking protein (TAIR:AT1G27100.1); Has 232 Blast hits to 209 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR