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12-5308-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21078473 [Map]; Strand: w
      • AT1G56290.1 - [+] show detail - CwfJ-like family protein
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: 12-5308-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAA TCAGAGGAAT GCTCGAGTTA CCAGAGGAAG 
    ATATGTATAG ACGAAGAAGA CAGGAGTCGG TGGAGAGCCA GAAGAAGGCG 
    GTTGCGACCT TTGCCCGCGA ATGGGAACAC TTTGATTGGA CGAAACAGCN 
    TTGATTAATA ACATCTATGG CTTGCTCGGT AATCTCATGT TTTTTCAACA 
    CAAGCATTTC TTCGAATGAC ATTGCTTTAG TAAAGAATGT TTGTTTGAGC 
    ATTGTTTGTC TTTAAATGTG TAGCTATATA TGTTGAGATC AGGTTGATAT 
    CGATAATGGT CCAATCAAAA GATGTTAAGA GTTGATTATA AAGTTACCAC 
    ATGAAGGTAA ACTTGATTTG CAACGAAACA TGAATAATTT TCGAATCTTT 
    AAATAAACCA AATCATGAGA GATACATTAG TGATTGGGGC ATGTGGGATT 
    CCAAAGATTC TACCTAGTTC TAGTTGGTTT TGACAGATAA TTTATTTTAT 
    GGTCTAGACA ATTGAACATG GAATTGAAAT TTTGATACAA CACGACACTC 
    ATACACAAAA GAAGTAAGCG TTAACGCATC GCAGCACTAC TCCTCGAGAC 
    ATTGACACGT GGTCTTTTGC TGCCCTTTGG ATTATTGTTA CAGTCATAGC 
    TCACGCCATC TCCACCAACC ATATCCGTGA ACATTCGTTG CAAGTCTTCC 
    AAGCTCTCTC CCTATTCATN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21078469 [Map]; Strand: w
      • AT1G56290.1 - [+] show detail - CwfJ-like family protein
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: 12-5308-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTACATTTAG TCCAAGATTG CTATTGAACT GTTGTTCATC ATCAATCACG 
    TGAACAAACC CTTTGTCTAG ACCAAACTCA ACGTGGAAGT AAGGGAAATT 
    CTTCGGTATA GAGTTTCTCA AACCTTTCAC GCTAGTGTCT ATGAGCTTCT 
    TCGCATTGTG CTGACTCCAT TCACTTTCCG CTTCATCGAT CGCCTTCTTG 
    AAGTATAAAG GACCTTCTTC TGCTACCTCT TGGGGGATTG GGATACACTC 
    AATCAAACAG TGGCGACGTT GCTGAGACAA ACCAATCACT GTCTCCAGAA 
    ACACTGCGTC TTTTCCTTCT TTTGCATACA TCATTATAAG ACACTTTTTG 
    AAATTACGAA TCTCGTCCCA AACATTGTCG TCAACACTTC TGCTGGCTGC 
    CTCGTGCTGC ATTGGCAAGA TACAGCAATG GCCTGGGACA AGGGGCTGAT 
    GTTGTGGTAA CATCAGATAG GTGAAGTTGG CAATGGACAC AACTAAGTGT 
    TTCGGCCGCT TTGGGTTCTC AAAACAGAAG AGACAGCGTT CTTGCTGAGT 
    CATAATACGT TTAACACGGT TGTCCTTTTC AGGAATGTTA CTTGACGATT 
    CCCGCTTCCT GGACTTTTTG CTTGGAGCGT CTCCATATTC ATACTCGTCA 
    TCANCANCTT GATTCNATGT TTTGNACTGN NNGNTCTGCA TTATGCTCTT 
    GGCTANATGC ATATCC

AT1G56290.1

Model type
Protein coding
Short Description
CwfJ-like family protein
Computational Description
CwfJ-like family protein; CONTAINS InterPro DOMAIN/s: Cwf19-like, C-terminal domain-1 (InterPro:IPR006768), Cwf19-like protein, C-terminal domain-2 (InterPro:IPR006767); BEST Arabidopsis thaliana protein match is: CwfJ-like family protein / zinc finger (CCCH-type) family protein (TAIR:AT5G56900.2); Has 2474 Blast hits to 2009 proteins in 284 species: Archae - 2; Bacteria - 39; Metazoa - 1047; Fungi - 300; Plants - 173; Viruses - 2; Other Eukaryotes - 911 (source: NCBI BLink).
Link
InterPro Scan - TAIR