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12-5311-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8074958 [Map]; Strand: c
      • AT5G23920.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -788; Region: promoter
      • AT5G23930.1 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-5311-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA AGCGACATCC TCAGTGCATT GGATTAGCTG 
    CGGATTCGGT GAAGAAGAAG ACCGAGTTTC TTGTGAAGAC AATGGGTTGG 
    CCTTTAAAGG TTGTAGCCTT CGACTCCTAT TGTACTTGGT TTCAGCTTGG 
    AGAAGTTCGT TTTACCGCGG TGTAATGTAA TCAAAGCTCT TATGTCGAAC 
    GGGCTGATCG GTGAAATGCC TGCGATATCG TCTGTTTTGA CGAGTCCTAA 
    GCTGAAGTTT TTGAAGCT

AT5G23920.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G23930.1

Model type
Protein coding
Short Description
Mitochondrial transcription termination factor family protein
Computational Description
Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT1G62085.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR