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12-5320-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16318954 [Map]; Strand: c
      • AT4G34060.1 - [+] show detail - demeter-like protein 3
        Distance: 0; Region: exon19 (CDS)
      • AT4G34060.2 - [+] show detail - demeter-like protein 3
        Distance: 0; Region: exon19 (CDS)
    Flanking Genome Sequence: 12-5320-1 - 3-prime edge 
    ATGATGATGA TAGTTTTATA CAATAGGATT TTCCCATCCT ACTTTCATCC 
    TTACTAAGGG ACTAGAAAAA CGTGCACTAT ATTGTGGTTC AACAGTGACA 
    TCTATTTTTA AACTTTTAGA CACAAGACGG ATTGAACNTT TGCTTTTGGA 
    CAGGTAACAA ACATAAATAT ATATTAAATT TTTTGTTGAA TTATGAAGTT 
    AAAATAACTG TGGAATGTTG TGTGGTGCTG TGCAGGGTTT TTATGTTTGA 
    GAGCATTTGA TCGAAAGCAA CGAGATCCAA AAGAGCTTGT CCGACGTCTA 
    CACACTCCAC CTGATGAGAG AGGGCCAAAG TTTATGAGTG ATGATGATAT 
    ATAGTTTCAT TTTATTCTTT TTGGTCTAGT TAGCAAATTA TTTAAACGAA 
    CGAATCTTTT CTTATAATAA CAAGCGATTC AACGATTGAG TAAATGCACG 
    TACGTATTGT TTCTTGATTT AAATGCATGT ACATTATAAT TATTTCACAA 
    GTGGTTTTCA TATAGTAGTT GTGGATGAAA AAGAAGAGAG CCCAAGAGTT 
    GGTCTTATGG TTATGCCTGG GTTTTGGATT GGTGGCAGTG TCATTCAAAA 
    CCGAGTTTAT GTTTCTGGTG TGAAGGTCCT TGAGTGAAGG ATTTCAGGAA 
    CTGTCTTAAT GCTTCTTCCC ACTTTGNTGN GCAACTTTTA TTTTCTCTTT 
    GNTATAAGCA AGCCTATAT

AT4G34060.1

Model type
Protein coding
Short Description
demeter-like protein 3
Curator Summary
Encodes a protein with 5-meC and thymine-DNA glycosylase activity with a preference for CpG and CpHpG sequences. Involved in maintaining methylation marks.
Computational Description
demeter-like protein 3 (DML3); CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: demeter-like 1 (TAIR:AT2G36490.1); Has 3859 Blast hits to 3748 proteins in 1288 species: Archae - 200; Bacteria - 2252; Metazoa - 138; Fungi - 63; Plants - 258; Viruses - 0; Other Eukaryotes - 948 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G34060.2

Model type
Protein coding
Short Description
demeter-like protein 3
Curator Summary
Encodes a protein with 5-meC and thymine-DNA glycosylase activity with a preference for CpG and CpHpG sequences. Involved in maintaining methylation marks.
Computational Description
demeter-like protein 3 (DML3); CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: HhH-GPD base excision DNA repair family protein (TAIR:AT5G04560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR