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Mutant Lines
12-5476-1

12-5476-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 2; Position: 14694908 [Map]; Strand: w
- AT2G34830.1 - [+] show detail - WRKY DNA-binding protein 35
  Distance: 0; Region: intron2 (CDS)

CATATATATA TTATATATAC GTTTGTAATA TAAAATAGTT ATATCCAATT 
TGTTAGAAAA CATTCCTATT GAAAGAACAT ACTTATATTT TATATCTATA 
TAAATTTCAT GTTTCTAATT AATATGTAGA AACNGGAGTC ACAGACATAG 
GGTTATATAA ACACATGTGA GTAAATATAT ACCTTGGATA AGGAGAACCT 
TTGATAGGTT TTTGACCGTA CTTTCGCCAA GCCCATAGAT CAGACGGAAC 
AACTTCTCCA CTGGACCGGC TGTTCATAGC GGCTGGAGCC GGTATGCACA 
CCACTTTCTT TGCCTGGCTC TTCCTGCATG AACCATCAGT ATATTGAGAG 
TTTGAGACAT ATATATGTAA GTATACGTCT AACTGTTGTA ATGTAAAGCT 
GATTTTGAGG TCAATTTTAG TGTGGGACAT GATGAGTTCA GTTTTAGATA 
TGGTGCATAA TGTANATGTT CATTGTTTGT TTATGATGTT TACACTTNAT 
ACATAACTAC GTACTGCGCA TACCTTTTTN AGTTTTGAAA AGATAAATAT 
GTNTAC

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 22311275 [Map]; Strand: w
  - AT1G60560.2 - [+] show detail - SWIM zinc finger family protein
    Distance: 0; Region: exon1 (CDS)
  - AT1G60560.1 - [+] show detail - SWIM zinc finger family protein
    Distance: 0; Region: exon1 (CDS)
  - AT1G60570.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
    Distance: -561; Region: promoter
Flanking Genome Sequence: 12-5476-1 - 3-prime edge
```
NCCGTNCCCA CCGTTTTCCT CCCTAGNCGN NCNGNTCACC CAANNCNNAG 
ATNGAACTNG TCNAATCATT TAAAGAGATT NCANTGCAAA ACCCACANGT 
NNAANACTTT TNATGGNCTG ATTTGACCTG GACCAANTNC GGAACATCAT 
NANCATCACG GACCANGNAA CATTANGTTC CATACACTAN AGNANGACNA 
ATTACCNGCC NGGGCCGTCT ACNACCCNAT GCCNTATAAN NNAGANANNT 
NCNCCCCNNA NCANTGNTNA CGNTNNNAAG NTANGAGGNN CGNNTTGNNG 
ANCNGCNCT
```

AT1G60560.1

Model type: Protein coding
Short Description: SWIM zinc finger family protein
Computational Description: SWIM zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G13970.1); Has 86 Blast hits to 86 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 5; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G60560.2

Model type: Protein coding
Short Description: SWIM zinc finger family protein
Computational Description: SWIM zinc finger family protein; BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G13970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G60570.1

Model type: Protein coding
Short Description: Galactose oxidase/kelch repeat superfamily protein
Computational Description: Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G19930.1); Has 2159 Blast hits to 2040 proteins in 157 species: Archae - 8; Bacteria - 131; Metazoa - 640; Fungi - 8; Plants - 1197; Viruses - 129; Other Eukaryotes - 46 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G34830.1

Model type: Protein coding
Short Description: WRKY DNA-binding protein 35
Curator Summary: member of WRKY Transcription Factor; Group II-e
Computational Description: WRKY DNA-binding protein 35 (WRKY35); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY group Iie (InterPro:IPR017412); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 14 (TAIR:AT1G30650.1); Has 5047 Blast hits to 3028 proteins in 237 species: Archae - 0; Bacteria - 12; Metazoa - 64; Fungi - 63; Plants - 3289; Viruses - 0; Other Eukaryotes - 1619 (source: NCBI BLink).
Link: InterPro Scan - TAIR