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12-5486-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22281791 [Map]; Strand: w
      • AT1G60470.1 - [+] show detail - galactinol synthase 4
        Distance: -1205; Region: intergenic
      • AT1G60480.1 - [+] show detail - pseudogene, putative ADP-ribosylation factor, similar to ADP-ribosylation fac...
        Distance: 2331; Region: intergenic
    Flanking Genome Sequence: 12-5486-1 - 5-prime edge 
    TGTGCGACTG GACAGGTCCC AGAAATTAGG GTTTTTTTAN GAGAGGAATT 
    GAATTTGGAA GAAGAAGATG AATATTGGAG AGGAAATGAG AAATGTAATT 
    ACAACGGCAT AAAGTTGTTT GTTCTCCATG TCATCTTCTG TTCTTTTCTC 
    TCTCTATATA TCGTGTATAC TGTTTGAAAC ACACATACTA TAAGAGGAAT 
    TGACGGGTGC GACTTAAGAA AGTACATGAA ATCAATGAGA GTACCTAGCT 
    GAGTAAAGAG ACATGTCGGT ATTTTATGTC ACTTCATTTG ATGAATTGAT 
    GAAGAAAACA TTTGTAACAA AGGTTGATAA CTCGGCTGCA ATTATATCTT 
    GGAGATCACA TAATCGACTG ATCGAGTCAT CGAGAATAGC AGCTAATATA 
    CCTAAATTAT TAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22311250 [Map]; Strand: w
      • AT1G60560.2 - [+] show detail - SWIM zinc finger family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G60560.1 - [+] show detail - SWIM zinc finger family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G60570.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: -586; Region: promoter
    Flanking Genome Sequence: 12-5486-1 - 3-prime edge 
    GTCGCACAGC TCACCCAAAA CAGAGATGGA AATAGTCGAA TCATTAGAAG 
    AGATTCCAGT GCAAAACCCA CAAGTAGAAG ACTTTTCATG GGCTGATTTG 
    ACCTGGACCA AATTCGGAAC ATCAGAGCAT CACNGACCAA GTAGCATTAG 
    TTCCATACGC AAGAGTCGAC GAATT

AT1G60470.1

Model type
Protein coding
Short Description
galactinol synthase 4
Computational Description
galactinol synthase 4 (GolS4); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galactinol synthase 7 (TAIR:AT1G60450.1); Has 1247 Blast hits to 1246 proteins in 290 species: Archae - 0; Bacteria - 113; Metazoa - 260; Fungi - 270; Plants - 469; Viruses - 69; Other Eukaryotes - 66 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G60480.1

Model type
Pseudogene
Computational Description
pseudogene, putative ADP-ribosylation factor, similar to ADP-ribosylation factor GI:166586 from (Arabidopsis thaliana); blastp match of 100% identity and 7.4e-53 P-value to GP|17154685|emb|CAD12855.1||AJ421017 ADP-ribosylation factor {Gossypium hirsutum}
Link
InterPro Scan - TAIR

AT1G60560.1

Model type
Protein coding
Short Description
SWIM zinc finger family protein
Computational Description
SWIM zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G13970.1); Has 86 Blast hits to 86 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 5; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G60560.2

Model type
Protein coding
Short Description
SWIM zinc finger family protein
Computational Description
SWIM zinc finger family protein; BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G13970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G60570.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G19930.1); Has 2159 Blast hits to 2040 proteins in 157 species: Archae - 8; Bacteria - 131; Metazoa - 640; Fungi - 8; Plants - 1197; Viruses - 129; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR