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13-0080-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19607342 [Map]; Strand: c
      • AT2G47890.1 - [+] show detail - B-box type zinc finger protein with CCT domain
        Distance: -654; Region: promoter
      • AT2G47890.2 - [+] show detail - B-box type zinc finger protein with CCT domain
        Distance: -654; Region: promoter
    Flanking Genome Sequence: 13-0080-1 - 3-prime edge 
    TAGGCCAGTA GTTGTCGAGA TCATGTTATT AGTGTCGCTG GAATGTTAGA 
    TATTGCCCAT CCTGTCTCTT TTTTTCCATC GTGCCCTAAA AGTCAAACTA 
    TGTATGGTAT TAGCTAATCT TGAATAGGTT TAATTCAGTA CNGGGTTGAG 
    ATAACCTCTA ATTGAAAACT ACCTTCATGG AGTAATAGTT ATCGAGGAAC 
    GATGATGAGG TATTAGTGGA GATAAGCAGA TTTGGACTCA ATATCAAAAA 
    TTAATGGTGG GATC

AT2G47890.1

Model type
Protein coding
Short Description
B-box type zinc finger protein with CCT domain
Computational Description
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 3246 Blast hits to 2264 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3153; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47890.2

Model type
Protein coding
Short Description
B-box type zinc finger protein with CCT domain
Computational Description
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR