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13-0180-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7751187 [Map]; Strand: w
      • AT5G23090.3 - [+] show detail - nuclear factor Y, subunit B13
        Distance: 799; Region: intergenic
      • AT5G23100.1 - [+] show detail - Protein of unknown function, DUF617
        Distance: -2247; Region: intergenic
    Flanking Genome Sequence: 13-0180-1 - 5-prime edge
    CTNGATAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATTC CGAGTGAGGG AGAGTCGAAG AAGGGGAAGG
    TACTAGCAGG ACCATCACCG GAGTGACGTG TCAGTTCGCA GGTTTCTGTT
    TACTCTGCAC CCGACAACTA ATAAGAGAAT CAGAACAGAC CTATTTCATA
    TCTTACTATT TATGACGTCA ATTGATCCTA ACTATATAAC TTACGTATTT
    ATTTGTAACA TTATTATACA TTCCTTTGTA TTATTATAAC AGTATGATTT
    TATTCTTTGA TATACAAAGA CAAAGCCTGT CGAATGTTGT ATTCCTCTTA
    ATGGCCCGTC ACACCAATCT TTATTTGAGA ATATTTCGTA CTGAATCGAG
    ACTATTAATG AATAGTTGTA TAATTGAATA CATTCATCTT TCCATGATAA
    ACCTATCTAT AAAGCATAAA CTTAAGTATC CATGTACCAA TTGATATCGA
    GTCTTGTTGT ATGTTTAACT TTTTTTAATC ACGGATTGTT GGAAACCTGT
    AGTGGTTGTA TGGATAATAT GTGTACTAAT TACTATATTA TCTAACATGC
    ACGATTTAAG TTTCGTATTA GTAAAGNGTT GTTACAGTAG TATAAGGATA
    GTGACGTCAA GCCGCTTGTG CCAAATTATT GTCTTGCGTT TTTTTACCAG
    GAAAAGTTGG AAAAAAAATN TTACTTTNAC NGCNAACACC TAAAAAACGN
    NCCTCANAAC TTTTNGCTTN AANNGGGT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7700476 [Map]; Strand: w
      • AT5G23000.1 - [+] show detail - myb domain protein 37
        Distance: 2549; Region: intergenic
      • AT5G23010.1 - [+] show detail - methylthioalkylmalate synthase 1
        Distance: -2616; Region: intergenic
    Flanking Genome Sequence: 13-0180-1 - 3-prime edge
    GTTGCATGTA GGTTGTTATA CGGTCCTCCA GTATTTTTAT TTCCTCATAG 
    AATAACTTGA AGTTTTTTTG GTGGAATCTC TTGAAATTCC ATGGTTAAAG
    ATTCATAGAG TTCACTGCTA TGTTTACCAA CCTTTTTTCT TCATGCCTGA
    ATTATTATCA AAATCCATAC ATAATCAAGT TTCTTAATAT TATGTTTTTA
    CGTATTCTTC CACTTGCAAT TTGAAGGGAA TTATTATCAA AATCCATACA
    TAATCAAGTT TTTAAAGAGT TGATTGTTTG TCATGAAGTA AGATGAACAA
    TTTCTACACA AATTAAAGGG CCTATGGGCT TATAAGTCCT AATTCTTTTT
    TGGACCAAAA GCT

AT5G23000.1

Model type
Protein coding
Short Description
myb domain protein 37
Curator Summary
"Putative homolog of the Blind gene in tomato. Together with RAX2 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB37, regulates axillary meristem formation. RAX1 is expressed in a small central domain within the boundary zone separating SAM and leaf primordia during early leaf primordium development and is currently the earliest spatial marker for future axillary meristems. Member of the R2R3 factor gene family."
Computational Description
myb domain protein 37 (MYB37); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT2G36890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G23010.1

Model type
Protein coding
Short Description
methylthioalkylmalate synthase 1
Curator Summary
Encodes a methylthioalkylmalate synthase, catalyzes the condensation reactions of the first two rounds of methionine chain elongation in the biosynthesis of methionine-derived glucosinolates.
Computational Description
methylthioalkylmalate synthase 1 (MAM1); FUNCTIONS IN: 2-(2'-methylthio)ethylmalate synthase activity; INVOLVED IN: glucosinolate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Alpha-isopropylmalate/homocitrate synthase, conserved site (InterPro:IPR002034), Pyruvate carboxyltransferase (InterPro:IPR000891); BEST Arabidopsis thaliana protein match is: 2-isopropylmalate synthase 2 (TAIR:AT5G23020.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G23090.3

Model type
Protein coding
Short Description
nuclear factor Y, subunit B13
Computational Description
"nuclear factor Y, subunit B13" (NF-YB13); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B12 (TAIR:AT5G08190.1); Has 1261 Blast hits to 1261 proteins in 237 species: Archae - 0; Bacteria - 0; Metazoa - 353; Fungi - 310; Plants - 511; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G23100.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF617
Computational Description
Protein of unknown function, DUF617; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF617 (TAIR:AT3G25640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR