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13-0195-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5967096 [Map]; Strand: c
      • AT1G17400.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -4615; Region: intergenic
      • AT1G17410.2 - [+] show detail - Nucleoside diphosphate kinase family protein
        Distance: 1438; Region: intergenic
    Flanking Genome Sequence: 13-0195-1 - 3-prime edge 
    GTTCACAATA GCAAACTGAA TTCGATACTA CAACATTATT TTCGTGTCGT 
    GATGCAATGT TAAAGAATTT AGATGAATAC ACTTGTGAAG ATGACATTTT 
    CAGTTTGAAG TAATAATTAT TAATTAGTGA TCTCCATTAT CGCAGGACAA 
    TAGATATTAA TAGCCTCTTT TTACACTATC CAAATGAAAA TGATACTTAT 
    GTTTAGAGTT TAAAAGAAAC TGTGATCATT GACTATAAAG TTAGATTATG 
    ATTGGAACCG ATAAAAGACT TATAAAATAA TTGTAGTGTC TATAATTGTT 
    TACATAATAA CTTAAAATGT GTATAATGCA ATCAAAATTA CAAAAAAAAA 
    AAAANGGGNN CCCCCCNTTT TTTAANNNAN TTTTTTTNNN NAANAAAATT 
    TNGGNNAAAN TTNNGGGNAN TTNNNNTTTT NGNANTTTTG GGGGG

AT1G17400.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G17410.2

Model type
Protein coding
Short Description
Nucleoside diphosphate kinase family protein
Computational Description
Nucleoside diphosphate kinase family protein; FUNCTIONS IN: nucleoside diphosphate kinase activity, ATP binding; INVOLVED IN: UTP biosynthetic process, GTP biosynthetic process, CTP biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: nucleoside diphosphate kinase 2 (TAIR:AT5G63310.1).
Link
InterPro Scan - TAIR