1. Home
  2. Mutant Lines
  3. 13-0324-1

13-0324-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20378988 [Map]; Strand: w
      • AT3G54990.2 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -2466; Region: intergenic
      • AT3G55000.1 - [+] show detail - tonneau family protein
        Distance: -2520; Region: intergenic
    Flanking Genome Sequence: 13-0324-1 - 5-prime edge 
    GGTCCAATAT GCCAACTACT ACTATTGTAT TGAGAGTAGG AAGAGAGAGA 
    AACCTTAATG GAGACAGAGG GACAGTGGGG TTATGTCAAT TGTCATATTA 
    TTCAACCACT CACCAATCAC TCACTCCAAA TCTATATCTC TCTTTTTACA 
    AATAATTATG ATAGATTTGA TGATAAGTTG GTTCTCAAAT CCCAGCCGTT 
    CAATTTATCC AGATATGCAA GAAAATATTA GATTTTAAGG AATCGGCCNC 
    CACCCNTGGG CNNAGACNAA NNNTNNCNGT TCATTCTAGT TCCAATAGGT 
    AAAAGAGTAA CCTTTTTTCT TACATTATTT ATAACTTGCA TTGCACAATA 
    ACGTATTAAC CTATTATTCA CAATGATAAT GTGTTTTGAA GTCATCTACA 
    CACTTNAAAG NTAATTACTC NNTCNAAAAT TGAAATATTG NNTACCACTC 
    ANATTNNTTG ANNNGGNNNA NNNACTNNAA CNNNNNCTNT NTNCNNNAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 7498632 [Map]; Strand: w
      • AT2G17240.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron1 (CDS)
      • AT2G17250.1 - [+] show detail - CCAAT-binding factor
        Distance: -845; Region: promoter
    Flanking Genome Sequence: 13-0324-1 - 3-prime edge 
    ATCCCACCTA ATGCAAACAA AACACATGAG GAGCTACCAA ATCACTTTGA 
    AGCCATGAAT ACAAAGCT

AT2G17240.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24506.1); Has 2795 Blast hits to 943 proteins in 155 species: Archae - 0; Bacteria - 388; Metazoa - 809; Fungi - 72; Plants - 153; Viruses - 54; Other Eukaryotes - 1319 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G17250.1

Model type
Protein coding
Short Description
CCAAT-binding factor
Computational Description
EMBRYO DEFECTIVE 2762 (EMB2762); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding factor (InterPro:IPR005612); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G54990.2

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.
Computational Description
SCHLAFMUTZE (SMZ); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G39250.1); Has 4786 Blast hits to 4207 proteins in 234 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 0; Plants - 4687; Viruses - 15; Other Eukaryotes - 52 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G55000.1

Model type
Protein coding
Short Description
tonneau family protein
Curator Summary
Encodes a protein of unknown function that is involved in cortical microtubule organization. Mutants exhibit abnormal cell growth and patterns of division. TON1A can functionally complement TON1B and their roles appear to be redundant in plants. Encodes a novel protein that is similar to human FOP and OFD1 centrosomal proteins. Localizes to the preprophase band, cytoplasm and cell cortex where it is probably associated with the cortical cytoskeleton. TON1A associates with plant centrins CEN1 and CEN2.
Computational Description
TONNEAU 1A (TON1A); INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FGFR1 oncogene partner (FOP), N-terminal dimerisation domain (InterPro:IPR018993), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana protein match is: tonneau 1b (TON1b) (TAIR:AT3G55005.1); Has 229 Blast hits to 226 proteins in 73 species: Archae - 0; Bacteria - 3; Metazoa - 122; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR