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13-1080-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3939852 [Map]; Strand: w
      • AT3G12380.1 - [+] show detail - actin-related protein 5
        Distance: 0; Region: exon9 (CDS)
      • AT3G12380.2 - [+] show detail - actin-related protein 5
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: 13-1080-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCAGG TAATGGATGA GACCGACGGA AGAGCGTCAT 
    CATAAGTTTC CGTTGCGCCG CCGCCATAAC TTCACCACCT TCTTCCGTCA 
    AAACCATTCT ACTTGCTATT TTTCTTCCTT TGTTTAATGA TTCCTTGTCT 
    GACCTGTCTT TGACCTTTTT GTCGTTTTTT TAATCCTTTT TTAATGATAA 
    CAGTGTTCCA ATTTCAAATC TTCGGCCTTC TNCCATGTAA ACCTANACCT 
    TTTGAGACAT TGAACATGGC AAGAAAAACA TATCAAATCT TGAAATGTGA 
    GTAATCACAT TGAGAAGATA GATCCAGAGG AAGACTCACG AATGAAAAGG 
    GTACTTAAGT GACAGAAGCT GCTTTAAATA ATCAGTGACA TGATATCCAC 
    CAATGTTAGT TCGGCTGGAT C

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2103386 [Map]; Strand: w
      • AT1G06840.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-1080-1 - 3-prime edge 
    NTGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AAATAGTCAA ACTTAGAAAA TGTCGTATTA TCACTCTTCA ATGCTCCCAC 
    CCAATACCAA CTACTTTCCT CTTTCTTTGT CTTGTGTTTC TTACTTGGTC 
    ATGGCCTTTT CCTTCTAAAC TCTCTCTCTC TCGAGATTTC GTTTTTTCCT 
    TGGGTCTCCT CTGTTTCCTC CTCTCTCGAT ATGTTTTCGA CCCATCATGT 
    CTCTCGTCTC CTCATACCTC TGCTCTTCTT CTTCCTCTTC TGTTGCTTTT 
    CTTCTACTTT TGCTCAAGAC GACATC

AT1G06840.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G01950.1); Has 194453 Blast hits to 138780 proteins in 4845 species: Archae - 155; Bacteria - 17954; Metazoa - 60073; Fungi - 10970; Plants - 82493; Viruses - 385; Other Eukaryotes - 22423 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G12380.1

Model type
Protein coding
Short Description
actin-related protein 5
Curator Summary
Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP gene family.
Computational Description
actin-related protein 5 (ARP5); CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: Actin-like ATPase superfamily protein (TAIR:AT2G42100.1); Has 21592 Blast hits to 13553 proteins in 2425 species: Archae - 18; Bacteria - 280; Metazoa - 9176; Fungi - 4874; Plants - 2192; Viruses - 30; Other Eukaryotes - 5022 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G12380.2

Model type
Protein coding
Short Description
actin-related protein 5
Curator Summary
Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP gene family.
Computational Description
actin-related protein 5 (ARP5); CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: Actin-like ATPase superfamily protein (TAIR:AT2G42100.1).
Link
InterPro Scan - TAIR