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13-1100-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 182353 [Map]; Strand: w
      • AT1G01490.2 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: -60; Region: promoter
      • AT1G01490.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-1100-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCAGA ATGGTACGAA AGAGAGAGAG AGAGAGCGAC 
    GAGAAGAGAT CTCTTTGTTT TCGTCTTTGC TTGTATGCGC AGTGAGATAA 
    GGCGCNGTGG TGTTGTGGCT CAGCGTCATT ACTTTCGGTC CTTTGGTTTG 
    TGTTTGTTTC CTTTTTTCTG ACCCTTTGAA ATTTCTTTCT CACCTTATCC 
    ACGTCATCTC TTCTTTTATT ATCTAAATCG AATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 182341 [Map]; Strand: w
      • AT1G01490.2 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: -48; Region: promoter
      • AT1G01490.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-1100-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAT 
    TCATTCATTC ATTATTGAGA GACTACTGAT CTCTCTCTCT CTGCATGCAT 
    CTTTCTCTCT ATTAATCTCT CCAGTATTTG TCAGGATTTG GGTATTTTTT 
    TAATAACGAT CAGTGTCCAA TCTCTCTTAT CGTCTTCATA AGTTTCCTAT 
    TATTTCATTC TTCTTCTTCT TTATTCTCAT TTCTCTCTCT CTCTCTTTTT 
    ACTCACAGAC AAATCTTTTT CACATCTCTT TGCAAATTCT TGAGAATT

AT1G01490.1

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G63950.1); Has 7083 Blast hits to 3987 proteins in 399 species: Archae - 47; Bacteria - 875; Metazoa - 1731; Fungi - 337; Plants - 1157; Viruses - 96; Other Eukaryotes - 2840 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01490.2

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G63950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR