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13-1138-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7834324 [Map]; Strand: c
      • AT1G22180.2 - [+] show detail - Sec14p-like phosphatidylinositol transfer family protein
        Distance: -3932; Region: intergenic
      • AT1G22190.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -1458; Region: intergenic
    Flanking Genome Sequence: 13-1138-1 - 3-prime edge 
    GGCTTACGGT TATGAAATCA TGCGTTGGAG TTTTTCTTGC TTTTCCCTTT 
    TCTCATGCGT AGAGTTTTTT TTCTTTCTTT ACAATTTGTT TAACCATAGT 
    TTTATAGGTT TGTAGCTATA TTAGTGGTTA ATTTATGGTC TAGCTAATTG 
    GTCTTTTTCT TATTCAGTTT TTGCATTAAA TGTAGATATC AATACTGAAA 
    GTTGACTTTT ATCAAAAATA CATAACAAAG TATAAGAAAA ATAACGCTTA 
    GACAAGTTAT TACACATATG CAATGTTCAC CAAAGCAAGC AAGTACGAAA 
    TATACATGCA TATGATAATA CATGTAAACG AGATAAATCA GCATCGTAAA 
    GATGAACTGG TAACACGGAC ACGAGCCATC CACATGGGTG GTACCTCCTT 
    ATGCGCGTCT TCCCTCAAAA TATTGATCAT TATAAAATGA TGACACCATA 
    GTCTAACCTT GCAAATTGAC GCCGTATTGA TTGTAGTGAC ATTTGTACAC 
    GATTACACGA AGCAATAAAT TAAGTGATGC AACTCTATAA GATATCGTAA 
    GATGATGAAA TGTTTAATAA ACTAATTAAA TGGATGATAT AATACGGAAT 
    TGACATTTGA GGAGTTCTCA GCCATTCNTT CTAACCCTCT AGACCCCTTC 
    TTTTTTAATN TNGGGTGATN AATTATCTAA ATAAAAGGTT AAACCNCTCA 
    TNAAACATGA TTTNNTCATN ACTTTGCGNA CCCAAAATTA TTGGT

AT1G22180.2

Model type
Protein coding
Short Description
Sec14p-like phosphatidylinositol transfer family protein
Computational Description
Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT4G08690.1); Has 2763 Blast hits to 2754 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 989; Fungi - 606; Plants - 846; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22190.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 4 (TAIR:AT1G78080.1); Has 5992 Blast hits to 5760 proteins in 260 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5935; Viruses - 12; Other Eukaryotes - 35 (source: NCBI BLink).
Link
InterPro Scan - TAIR