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13-1664-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19949277 [Map]; Strand: c
      • AT5G49200.1 - [+] show detail - WD-40 repeat family protein / zfwd4 protein (ZFWD4)
        Distance: -222; Region: promoter
      • AT5G49210.1 - [+] show detail - unknown protein; Has 3675 Blast hits to 2315 proteins in 312 species: Archae ...
        Distance: -445; Region: promoter
      • AT5G49210.2 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -566; Region: promoter
    Flanking Genome Sequence: 13-1664-1 - 3-prime edge 
    GNNTNACCCG GCCGCGCGGA TCACCAACCC GGNCCGTCGA NCACCCTTGC 
    GCTANTNATT CGNGGGTCCA ATTAATGTNC AATTNTATCA TTAGGTTAGG 
    TCATTAATTA TACCCTAAAA TCTCTGTACT AGTANAAAAA AAGANGNCTT 
    TATTCTGTAT ACTAATTACT AATTAGAGCT NAATCAGGAT GAGTCCATCG 
    CAACTTGTCT AATTACTGTT ANCCAAGACC ACCCTANAGT CAATATCATA 
    TGTTAACAAT GATGTAAACC CTTTTAGTAT TGAAGGCCAA AGTAGTAATT 
    AATCCATTGA CTAACTTNTT TTAAACCTTG AGACAGTGAA ATACTAACTC 
    ATTCAACAAA AATGGATCAA NAACAAGGAA ATATNCTGAT TAAAGCCAAT 
    GTAGGNANTT NATCGACTGA ATTNACTAAC AATNGTGNTG ATTCTGATTA 
    NANCCAATTG ATTNGGNCAT ATTCGGTNAN NATATTTNGA TTTAGANTGN 
    NTAGGTTNTA TTNGGATTNN GGNNNCGAGN ATAAATTAAN ANTTTGNACT 
    NGNNCNNACN ACANCGAANN ATNNTTCTTT GNGATGCNTN NCTGNGCNGT 
    AGAAAAANGC TAACCANGCC NGGGCNGTNT GCTNACTATN NCNCNTCTNN 
    ATNTTNNANA GNNNNTATAN ATGGNTNNNT NANGGGTNCT NGNNNGAANN 
    NCNTTATNAN ANTNTGANNN NTGGNNNNNA AAANNAAGNA ATNTGAAANT 
    CNGN

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19949161 [Map]; Strand: c
      • AT5G49200.1 - [+] show detail - WD-40 repeat family protein / zfwd4 protein (ZFWD4)
        Distance: -106; Region: promoter
      • AT5G49210.1 - [+] show detail - unknown protein; Has 3675 Blast hits to 2315 proteins in 312 species: Archae ...
        Distance: -561; Region: promoter
      • AT5G49210.2 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -682; Region: promoter
    Flanking Genome Sequence: 13-1664-1 - 5-prime edge 
    CGCTCATCTA TATATACACC ATTCCTCTGC AGCCCCAGAT C

AT5G49200.1

Model type
Protein coding
Short Description
WD-40 repeat family protein / zfwd4 protein (ZFWD4)
Computational Description
WD-40 repeat family protein / zfwd4 protein (ZFWD4); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / zfwd3 protein (ZFWD3) (TAIR:AT5G40880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G49210.1

Model type
Protein coding
Computational Description
unknown protein; Has 3675 Blast hits to 2315 proteins in 312 species: Archae - 2; Bacteria - 342; Metazoa - 1190; Fungi - 281; Plants - 114; Viruses - 4; Other Eukaryotes - 1742 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G49210.2

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR