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13-2676-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12048640 [Map]; Strand: w
      • AT2G28250.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 2103; Region: intergenic
      • AT2G28260.1 - [+] show detail - cyclic nucleotide-gated channel 15
        Distance: -1349; Region: intergenic
    Flanking Genome Sequence: 13-2676-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGTACCAGTT CTTGCACGGA CCACACTGCT TGACTTTCAA GTTTCTCTTA 
    AATATTTAAT TTGGTTCCAA TTTTTACGAA CTACTGATTA GTTTTACTTT 
    GTTTGTTTCT TTCTAGATAT ACATCTTGTT TATAGAGCAT TTTAGTCCAC 
    GCTAAAGTTA GGTTCCAGTT TCCCTCATGT TTTAGATGAC TCTTTGTAAG 
    TGTTGTGTTG GTGAATTGAA TCAATCCCTA GGCCCTTGAT ACATACATGC 
    ATTTGATGAT GTTTTAACTA ATTTGTTCAA GTGTTATAGT ATTTGCTTCG 
    TCGCCTATAG CAAACCATAT TTGTCTTCTA TTCATTAAAT CTATCCGAAA 
    CTACGTTTAC GATAGTAATA ATTTGGTCAC AAATCTCGAC GTATTTACTC 
    ATCGGATTAG ATTGCTTTAA TTGCACCACT GTATATTTCG TTAGATTATT 
    CACATGTCAT AAAAAAATTT TTAAAAAAAT GCCAAACACC CCTCAAAATA 
    CGAAGACTAT TTGCATATTA TATTGAGATT TAAGCTATTA CAATAGTATA 
    AGATGAATCG GTCAATGTAG TCTCGAACTA GCAAAATGAC AGATTTCAAA 
    ACTAAAATAA GTTGGATACA CCTTCCACAC TTCTTAATGT ATAAAAAATC 
    CATCAGTTTT GCATTTTAAT TCGTTTCTAC TGGAAACTCA CATATTTATA 
    TATTGAAGAT GAATTGCAAA GAAAATTCAT TTTANTAAAC GTATACNATA 
    TTGGTCACTT CATCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12048708 [Map]; Strand: w
      • AT2G28250.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 2171; Region: intergenic
      • AT2G28260.1 - [+] show detail - cyclic nucleotide-gated channel 15
        Distance: -1281; Region: intergenic
    Flanking Genome Sequence: 13-2676-1 - 5-prime edge 
    GGTCACCGCA ACAGCGCCCC ACATACAGAC TCCCCTTCCG GGCGCGGATN 
    ACCAGACCGG GCCGTCNACC ANGCAGTGNC TATATANNGA NTANTATTAC 
    TAGATGANCA TNTATGCGAC TNTAGATACN CAAATATTGA AGGAGATATG 
    TTTGTCTTTT ATAGTGATTG GCTTTTTTTG TAACANTATA TTGGNAAAGT 
    GTGATTTNAA ATCATTGAGT TACCAGTGAC TAAATATNAA ACCGAAGATT 
    TNTTGAATCG GTNGATGTNT TNGATNTTTG TAAGGGANTN TTGCNAATCG 
    GTAATTTTTA NCTTNGTTNT ATNTGCTNNA TTNAGAAGTA NTCTTNGAGA 
    TGANACTGGA TNACNTTNTN ANANGGAAAN AAANGGANGG NGCANNGGAC 
    NANTNGTGNG NANNGNTAAA AAAANAAAGA GAAGNGNGNT AGGNNGGTCT 
    AGGNNANNNA AATANTAANA NCGAAACNAA NGNGCGNNAG ATAAANAAAG 
    GNTAAANNGG NTGGANNNCN ATGNNCCTNA TGTNTNAANG AAAAATTANA 
    TACATNNAAA TAAAATANNN ATTTGTNNAN ANTAAAAAAA ANACNAAANA 
    NAANNTTTNT NNTTANTNNT TGNTGTNTGT ANTNAGAAAN NNNNATNTNT 
    NTANANAAAN TTTNNANTAT ANAAGAACAC TACNNAGAAN ATNNAAAAAN 
    TNNATANATA ANAAGTAAGN NAAGAAAATA AAAACGAAAA TAAGNNAAAC 
    AAANAANANG AANNAGTNAT NNNAGNNAAN AAAAATGAGA TG

AT2G28250.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
NCRK; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G10620.1); Has 107841 Blast hits to 106732 proteins in 3090 species: Archae - 127; Bacteria - 12810; Metazoa - 39123; Fungi - 9020; Plants - 31343; Viruses - 335; Other Eukaryotes - 15083 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G28260.1

Model type
Protein coding
Short Description
cyclic nucleotide-gated channel 15
Curator Summary
member of Cyclic nucleotide gated channel family
Computational Description
cyclic nucleotide-gated channel 15 (CNGC15); FUNCTIONS IN: cyclic nucleotide binding, calmodulin binding, cation channel activity; INVOLVED IN: potassium ion transport, ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 14 (TAIR:AT2G24610.1); Has 3177 Blast hits to 3099 proteins in 290 species: Archae - 0; Bacteria - 161; Metazoa - 1483; Fungi - 19; Plants - 962; Viruses - 0; Other Eukaryotes - 552 (source: NCBI BLink).
Link
InterPro Scan - TAIR