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13-3132-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12666492 [Map]; Strand: w
      • AT2G29620.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -689; Region: promoter
      • AT2G29630.3 - [+] show detail - thiaminC
        Distance: -443; Region: promoter
      • AT2G29630.1 - [+] show detail - thiaminC
        Distance: -494; Region: promoter
      • AT2G29630.2 - [+] show detail - thiaminC
        Distance: -542; Region: promoter
    Flanking Genome Sequence: 13-3132-1 - 5-prime edge
    CNTTTAAAAA CTAACAAAAT CGGTTATACT GATAACGGTC GGTACGGGAT 
    TTTCCCATCC TACTTTCATC GNCTTGATNC AAACANTGCA NNTNTNCGGG
    TCTCTNNGNA CTGANNTNTA TCANACCTGT CTTTGATTTC AGTTAAACTG
    ATAATAATTG TCATTTACGT CTCAAAAGAA TTGAAATATC ATGTCTCTCA
    AGTCTCAAGA TATGGACCTT ACATATTGTT ATGCATTATT TATCAAAATA
    TGTGGACAAA ACATAATATC AATGTCGCTT TCAGAATAAT TGAACAACAG
    ATATTGAGAA ATCAATTTTT ATGGTTATAT CAATTGTCAT TGCCAACATC
    TATTACATAG TAACAGTCCA ATTTACATTA CAATGGTAAT TCAATGAAGG
    TAATTTACTT TTTATTGGTT TACTCGTGAA ACGACGTTCT CCTCCTCACG
    TACCTTATCT TAATATCCTG ATCAACGGAC ACCAATTTTC GAGAAAATAT
    CTGAGAAAGA GGACACGTCA GCAAGCCTTT CGCTTTTGGC TGCATTGGGC
    CGTGACAATA TTCAGACGAT TCAGGAGGTT CGTTCCTTTT TTAAAGGAGC
    CTAATCACTC TGAGTACCAC TGACTCACTC AGTGNGCGCG ATTCATTTCA
    AAAACGAGCC AGCCCTNTTN TTCCTTCGNC TACTAGATCA GATCCAAAGC
    TACCAGC

AT2G29620.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07330.1); Has 887 Blast hits to 750 proteins in 151 species: Archae - 2; Bacteria - 63; Metazoa - 270; Fungi - 51; Plants - 111; Viruses - 6; Other Eukaryotes - 384 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G29630.1

Model type
Protein coding
Short Description
thiaminC
Curator Summary
Encodes a protein involved in thiamine biosynthesis. The protein is an iron-sulfur cluster protein predicted to catalyze the conversion of 5-aminoimidazole ribonucleotide (AIR) to hydroxymethylpyrimidine phosphate (HMP-P). A severe reduction of THIC levels in plants decreases vitamin B1 (thiamin diphosphate (TPP)) levels and also leads to changes in the levels of numerous other metabolites since so many primary metabolic enzymes require a TPP co-factor. thiC mutants are chlorotic and arrest in their development at the cotyledon stage. A N-terminal targeting sequence directs the THIC protein to the chloroplast stroma. The THIC transcript is regulated by a TPP riboswitch in the 3' UTR. THIC transcripts are observed in seedlings 5 or more days after germination, and light promotes the expression of this gene.
Computational Description
thiaminC (THIC); FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, ADP-ribose pyrophosphohydrolase activity; INVOLVED IN: response to vitamin B1, detection of bacterium, thiamin biosynthetic process; LOCATED IN: chloroplast, chloroplast stroma, plastid; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine biosynthesis protein ThiC (InterPro:IPR002817); Has 4416 Blast hits to 4411 proteins in 1719 species: Archae - 238; Bacteria - 3466; Metazoa - 3; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 648 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G29630.2

Model type
Protein coding
Short Description
thiaminC
Curator Summary
Encodes a protein involved in thiamin biosynthesis. The protein is an iron-sulfur cluster protein predicted to catalyze the conversion of 5-aminoimidazole ribonucleotide (AIR) to hydroxymethylpyrimidine (HMP) or hydroxymethylpyrimidine phosphate (HMP-P). A severe reduction of THIC levels in plants decreases vitamin B1 (thiamin diphosphate (TPP)) levels and also leads to changes in the levels of numerous other metabolites since so many primary metabolic enzymes require a TPP co-factor. thiC mutants are chlorotic and arrest in their development at the cotyledon stage. A N-terminal targeting sequence directs the THIC protein to the chloroplast stroma. A conserved TPP-binding site is located in the 3' UTR of the At2g29630.2 gene model, and is predicted to function as a riboswitch. The riboswitch controls the formation of transcripts with alternative 3' UTR lengths, which affect mRNA accumulation and protein production. THIC transcripts are observed in seedlings 5 or more days after germination, and light promotes the expression of this gene. Recessive mutant isolated by Redei. Leaves but not cotyledons white, lethal; restored to normal by thiamine or 2,5-dimethyl-4-aminopyrimidine.
Computational Description
thiaminC (THIC); FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, ADP-ribose pyrophosphohydrolase activity; INVOLVED IN: response to vitamin B1, detection of bacterium, thiamin biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, plastid; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine biosynthesis protein ThiC (InterPro:IPR002817); Has 4416 Blast hits to 4411 proteins in 1719 species: Archae - 238; Bacteria - 3466; Metazoa - 3; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 648 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G29630.3

Model type
Protein coding
Short Description
thiaminC
Computational Description
thiaminC (THIC); CONTAINS InterPro DOMAIN/s: Thiamine biosynthesis protein ThiC (InterPro:IPR002817).
Link
InterPro Scan - TAIR