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13-3163-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20972865 [Map]; Strand: w
      • AT3G56610.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -781; Region: promoter
      • AT3G56620.1 - [+] show detail - nodulin MtN21 /EamA-like transporter family protein
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: 13-3163-1 - 5-prime edge 
    TTATAAACTA ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTCATCCTAC TTCCTTTCCC CAAAGAACCG TGCAAACTCC 
    CACCACTAAA ATTGCCATTC CAAGAACCCT AAATTTCGGA GTTGGATCAA 
    CAAAATATAC TAGTTTAGAA ACATGATGAT GAATCCAGCC ATATGACCTA 
    ATCAGATCAA AATCCACTGG TTGCTTACCC GCCAAGGTTT AAAGTTTGGT 
    TGAGGATGAG GAAGCCAATG ATGGATC

AT3G56610.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sperm cell, sepal, pedicel, synergid; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G56620.1

Model type
Protein coding
Short Description
nodulin MtN21 /EamA-like transporter family protein
Computational Description
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT2G40900.1); Has 3973 Blast hits to 3961 proteins in 822 species: Archae - 18; Bacteria - 2149; Metazoa - 8; Fungi - 0; Plants - 1241; Viruses - 0; Other Eukaryotes - 557 (source: NCBI BLink).
Link
InterPro Scan - TAIR