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13-3875-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5167087 [Map]; Strand: w
      • AT1G14980.1 - [+] show detail - chaperonin 10
        Distance: -342; Region: promoter
      • AT1G14990.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: 13-3875-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATTAAT TGCTCTGTCA GTTTTCCCCA TTTCTTTCAA 
    GGTGTTAACC AAAGTTTTTC CCCGGATTGT TGCTTTGCTA TGCTATATGT 
    TTATTACATT GTGCCTCTGC GGGAATTACA TGCTCTTAAT TTTCAGAGTA 
    CAAATCTGAA TAATCCATGT AAGCCAATGG TACGGTTCCG GACTTATACA 
    AACACCATAC AAATGTTCCA AGATACCGGG ATTCGAATTT GCTATAACAA 
    GATTAGGCAC AAAGCTGAAA CAAAGAGAGC TGGCGCCACT AGCCACTTCC 
    ATCGAGTTGG CCTTGAGATA GAAGGTGAGC CATGTATTGC TGCATTCACA 
    ATAAAATGAG CTCAATTCTT GGTTCTAACC CCACATGATT CGACAAACAT 
    TTCTATCAAT GGCACCACAA AGTCAGTACC ATCAAGATTC TAGACTTATG 
    GAAACTGACC TTTACAACAC TAAAATATCC GCACCACAGA GATTATCATA 
    AAGAGATTGA AGAAACTTAC GGAGTGGTAA ACGTATGGAG ATTTTCCCTG 
    GCGATCAAAA TGCTTAGCCA TTATGCAGAA TT

AT1G14980.1

Model type
Protein coding
Short Description
chaperonin 10
Curator Summary
Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs.
Computational Description
chaperonin 10 (CPN10); FUNCTIONS IN: copper ion binding, chaperone binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn10 (InterPro:IPR020818), GroES-like (InterPro:IPR011032), Chaperonin Cpn10, conserved site (InterPro:IPR018369), Chaperonin Cpn10, subgroup (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: GroES-like family protein (TAIR:AT1G23100.1); Has 9195 Blast hits to 9085 proteins in 2839 species: Archae - 7; Bacteria - 6160; Metazoa - 328; Fungi - 119; Plants - 343; Viruses - 2; Other Eukaryotes - 2236 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G14990.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages.
Link
InterPro Scan - TAIR