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13-3883-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7203353 [Map]; Strand: c
      • AT1G20750.1 - [+] show detail - RAD3-like DNA-binding helicase protein
        Distance: 0; Region: exon25 (CDS)
    Flanking Genome Sequence: 13-3883-1 - 5-prime edge 
    CNTNGATAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTATTATG GGAAAGAAAC AGTGGTACAG ATCGGGAAAC 
    TTTGCTCTAT TGATCCAACA TAAATAAAAA AGCATGAGAT AGATATCGTT 
    TACTCAGGTT CTATCAATTA TTTCCATAAC CGCAGTGAGA TGAGAGATTA 
    TGCGTTCTAC AATAATAACT AGGTTAATTA GTTGATCTGT AAATGTGAAA 
    TCATTTAAGA CTTCGCTTAC CAAATTAAAA AGAGAAGCGA TTTCTTGTGA 
    CACAAGTTAA GTAATATTCA TACGCTCAAC TTGATCATTT TTATCATGGA 
    CATGTGAAAT TAAGAGCTAG CATCCCAAAA TCTGAAGAGG ATAGCAAAGG 
    GTTTTTTAGT GGCTTCAAAT TAAGACTAAG TTTATTTCAA ATTATTTATA 
    ACTGTGTGAT TTGGTTATAA TAATTCTGAT AATATATGAA AGTAATTCAT 
    TTTGGAAAAG AGTAATCTTT CATCAACCGT AAAGAGTTAC GAAATGAACA 
    ATCTCTTCAT GTCCCGGCTT TCTTGTTATA CTTGTTCTGA TATATATCTA 
    GTGTGCTNGC TTTTCCTTAC TTTCTATATA TATGTNCTTA AATTTTCTTA 
    ATATCCATTA TGGNCTCGCT TTAATTTTTT CTTGATTCCA TTGCTCTTGT 
    TCTTNCCACG TNCGACGNGG NGTCAGTNCT TGTTCATTCT GCAANGGGNA 
    ANTTTAGCCN GGGGGNNGGN CAGGATTGCA AT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7203353 [Map]; Strand: c
      • AT1G20750.1 - [+] show detail - RAD3-like DNA-binding helicase protein
        Distance: 0; Region: exon25 (CDS)
    Flanking Genome Sequence: 13-3883-1 - 3-prime edge 
    ANTTGAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC 
    CCCCCATATG CAATCTTTAG AGGTCTGAAA TCAGTTGTAA CTTGTAACAG 
    AGATGTACCA AAAGCTGATG AGATTATATC TTTAGGCATT TGTATAAAAA 
    AAGACTGTAT AATATATATC ATAAAGATTT TAAATTAAGA AAAATATTAA 
    GTTATTACAA ACTGAAACCT CGAGTTGCTT CTAGGACTTA ATGTTATGCA 
    AGAGTAGATA CCTTGTGCGT TAACCTTGTT TCCTTGCTTG CAGCATCATT 
    CGTGACTTCT AGATGATCAG CAAAGAACAA AATCTGCAAA ACAAGTAAAA 
    CTAGATCTTA ATATCAAGAC AATGCACTCT CATGAATCAG TCACTAACTA 
    AAGTGAAGCT

AT1G20750.1

Model type
Protein coding
Short Description
RAD3-like DNA-binding helicase protein
Computational Description
RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20720.1); Has 2571 Blast hits to 1958 proteins in 520 species: Archae - 146; Bacteria - 396; Metazoa - 797; Fungi - 439; Plants - 210; Viruses - 2; Other Eukaryotes - 581 (source: NCBI BLink).
Link
InterPro Scan - TAIR