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13-5540-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3728627 [Map]; Strand: c
      • AT1G11145.1 - [+] show detail - Protein of unknown function (DUF674)
        Distance: -461; Region: promoter
      • AT1G11150.1 - [+] show detail - transposable element gene
        Distance: -344; Region: promoter
    Flanking Genome Sequence: 13-5540-1 - 5-prime edge 
    ATGCCACCTA AAGCCATAAG ATTTAAAAAT CTCTTACAAT CATTATAAAT 
    CTAATCCTTA AGTTTTCAAG GACATGAAAA TTTTGAGTAG ATTTTCAAGC 
    T

AT1G11145.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF674)
Computational Description
Protein of unknown function (DUF674); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF674) (TAIR:AT5G01150.1); Has 48 Blast hits to 48 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11150.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 30% identity and 3.2e-59 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}
Link
InterPro Scan - TAIR