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13-5658-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3890097 [Map]; Strand: w
      • AT1G11580.1 - [+] show detail - methylesterase PCR A
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-5658-1 - 5-prime edge 
    GCTAGAACNG NGAGNCAGGG NCNNACTGNN NNGAANGGTN GGTCGACTAG 
    AGGCAGGTAN GANCACGCGC GNGACACTNA CANGNGCGAG ACAAGGNCTA 
    GGCAGAGACA GCGACGNTGT ACCGGTACCG NAGATTTCAT CTTCGGAAAC 
    TCTGCTGTGG NATTCCAGAA CTGCGACATN GCGGCACGAA ATCCTGGAGC 
    TGGGCAAAAG AACATGTTAA CGGCTCAAGG ACGGGAGGAT CAGAACCAGA 
    ACACCGCCAT NTCGATCCAA AAATGTAAGA TAACGGCTAG NNCGGATCTT 
    GCNCCTGNAA AAGGANCNGA GANAACGNGN CTNGGACGAC CGGGGGAAGT 
    TAGNACTCAA GAACAGGGAG CATGCAGTCT NNCATTGACA ACCACATNGG 
    ACCCNGNTGG NAGGGGANNC ATNGGGGAGG GNGAGGGTGC GGCNTCTCCG 
    ANGGTGGGGT NGANGGGNGA GAGTGCAAAA NANCCGNACC NGGNAACNGG 
    AANNCGANAT ANGAAGAAGN GAAATAGGAA AAGGGGAANA TAAAANGGAT 
    ATNTANANAG ANTGANNANG AGGGCNNAGN NNAAATACAC NTGGNGGCAG 
    AAAANTANNN NNNCCNGNGN CCGNTGNGAA GCAGNACGGN GAGNATNNNG 
    NGAGAGNGGG AGGNGAAGGG GAGANGGAGG NNNGNGGNGA GAGGAGNNAG 
    AGANGAGANA ANGGAGANGN GGNGTNNGGG NGAGNNGANC CGNNNGGAGA 
    NAGNAAAGAA GAGAAANGNG ANT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3889990 [Map]; Strand: w
      • AT1G11580.1 - [+] show detail - methylesterase PCR A
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-5658-1 - 3-prime edge 
    CGTAGAGCCA CAGCCTGGTG CTTTGCCGGC CCTGCAGTGT TTTGGAACCA 
    TATGTCTTGT GCCATAAACC CGTCTCCATT GGCAGCTGTA CATGTTTTCA 
    AAGCAATATT TTAAGTTCTT CGGATACAAG AATGTAATAA CTTAAAAGAC 
    ACAAATGAAA GAAAAATGTT ATATTACCAA CAGTGGCTGA TCTGAAGGTG 
    GTGGATC

AT1G11580.1

Model type
Protein coding
Short Description
methylesterase PCR A
Computational Description
methylesterase PCR A (PMEPCRA); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase inhibitor (InterPro:IPR006501), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT1G11590.1); Has 3127 Blast hits to 3075 proteins in 484 species: Archae - 6; Bacteria - 913; Metazoa - 1; Fungi - 197; Plants - 1984; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR