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15-0391-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2981809 [Map]; Strand: c
      • AT5G09610.1 - [+] show detail - pumilio 21
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-0391-1 - 5-prime edge 
    GTTGGATAGG TATCGAGATC TTGGAGGTAC TTTTGGAACT CAGTGAAACG 
    TTGTGCACAC GTCATCATGT CCAACAGACT TGATAGCCAG TTACGATCCT 
    TGTCGACGCC AGGGCTCACN GAAACTCAGA GGAGGAGGAG GGAAGGGTTT 
    GCCGGAATAT CTGGAGGAAG AATCATCTGG TTGGGTCAAC GACGACGGAG 
    TGAACGGAGG AGCGTTGAAG CTAGCGGCGG AGATATGACC AACGTTATAA 
    ACGTTGAGAT TGGGGTAGTT GTTGTTGCTG GATTCTCCAG GTTCTTGATG 
    GTTGTAGTTG GCGTAGAGTC TAAGATTGTC GAACGCAGTG AGAAGAGGAG 
    GATTAGGGTT GTTGTTGTTT ATGTTGGTGG TTCCGGATTC TCCAGGTTCT 
    TGATGGTTAT AGTTGGCATA GAGTTCAAGG TTGTTGAACG CAGTGACAAG 
    AGGAGGATTA GGGTGGTTTT TATTTCTGTT GATGGTTGTG TTGCCGGATT 
    CTCCAGGTTC TTGATTGNTT TTGTTGGCAT ANAGTTTAAA AACTCTTGNA 
    CGCTGTGANA AAANNGANGA TTANGGTGGN NNTNNNNNNT GNNATNNNNA 
    NNNTNNATNT NTGANNTTCT ANAAANTNTT TTANNCCNGC TNTNANCTCN 
    TNNTNNNNNT CNCNNANNAN TNAAACCCNT TTTTNTGNNN NTNTTTNTAA 
    CCCNCCTTTT CTTCNNNNTC CNNNNTTCCN NCACCAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2981925 [Map]; Strand: c
      • AT5G09610.1 - [+] show detail - pumilio 21
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-0391-1 - 3-prime edge 
    TATCCAACGG CTGAGAGGGA GAGCCATCTG TTCAAGATCG GATCAGCGTT 
    AACCACAACC AAACGCATTT TCCTCCACTT GGCTACGAAC CAATACGGCT 
    CACAAGCT

AT5G09610.1

Model type
Protein coding
Short Description
pumilio 21
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 21 (PUM21); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 16 (TAIR:AT5G59280.1); Has 4825 Blast hits to 2764 proteins in 231 species: Archae - 2; Bacteria - 5; Metazoa - 477; Fungi - 433; Plants - 446; Viruses - 4; Other Eukaryotes - 3458 (source: NCBI BLink).
Link
InterPro Scan - TAIR