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15-0628-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17840271 [Map]; Strand: w
      • AT2G42870.1 - [+] show detail - phy rapidly regulated 1
        Distance: -3021; Region: intergenic
      • AT2G42880.1 - [+] show detail - MAP kinase 20
        Distance: 117; Region: intergenic
    Flanking Genome Sequence: 15-0628-1 - 3-prime edge 
    TCAGTGTGGA TGCGCATGGT GATGATGATG ATGGTTTCAT GGCACATCCA 
    AACGCATGTG GTGGTGGGAA CCCATATCAC AGGCACCACT TTGTTCTTCC 
    AAATGTCAGT AGAAACAGAA AGGTGAATTG TCACTTGATC ATATCTTTAA

AT2G42870.1

Model type
Protein coding
Short Description
phy rapidly regulated 1
Curator Summary
Encodes PHYTOCHROME RAPIDLY REGULATED1 (PAR1), an atypical basic helix-loop-helix (bHLP) protein. Closely related to PAR2 (At3g58850). Up regulated after simulated shade perception. Acts in the nucleus to control plant development and as a negative regulator of shade avoidance response. Functions as transcriptional repressor of auxin-responsive genes SAUR15 (AT4G38850) and SAUR68 (AT1G29510).
Computational Description
PHY RAPIDLY REGULATED 1 (PAR1); BEST Arabidopsis thaliana protein match is: phy rapidly regulated 2 (TAIR:AT3G58850.1); Has 99 Blast hits to 99 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G42880.1

Model type
Protein coding
Short Description
MAP kinase 20
Curator Summary
member of MAP Kinase
Computational Description
MAP kinase 20 (MPK20); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MAP kinase 19 (TAIR:AT3G14720.1); Has 119531 Blast hits to 118315 proteins in 3667 species: Archae - 102; Bacteria - 13281; Metazoa - 43923; Fungi - 12334; Plants - 29390; Viruses - 579; Other Eukaryotes - 19922 (source: NCBI BLink).
Link
InterPro Scan - TAIR