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15-0835-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5193552 [Map]; Strand: c
      • AT1G15100.1 - [+] show detail - RING-H2 finger A2A
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 15-0835-1 - 5-prime edge 
    CGTGCGCCCC TTCTTTTCTC GGATTTTTTT TGAGGTCTCT TTCTTCTATG 
    ANAGGAGAAC CTTTTGTTTG TTTGGTTTTT TTTTTANNTT TNNAATTGGA 
    AANNNGAAAA TTTGAAANNN NCAAATTTNN CCCGTNGGNN TNTTNGNGGT 
    CCCTNGCNGN GNNNTNTNNN NAANGGGAAA AAANNNNATT CCCANTNNAN 
    TTGNAAAAAT NTGGNAANCN NANTNNNNAA NCCCNGGAAA TTTGGGTNNN 
    GTTTTGGNCC CNGGNAAAAA AANAAAAAAN GNANTGGGNA AATTNGAAAA 
    CNNNTTGGNC CTNNNTANNA NCCCCNCNAA NNNNGAAAAA AAANNNNGGG 
    AAATAANGGN GGGNNNCNAC CCGGGNCCGN NANCNN

AT1G15100.1

Model type
Protein coding
Short Description
RING-H2 finger A2A
Curator Summary
Encodes a putative RING-H2 finger protein RHA2a.
Computational Description
RING-H2 finger A2A (RHA2A); FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: response to salt stress, positive regulation of abscisic acid mediated signaling pathway, regulation of response to osmotic stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger protein 2B (TAIR:AT2G01150.1); Has 8620 Blast hits to 8597 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 2194; Fungi - 672; Plants - 4576; Viruses - 12; Other Eukaryotes - 1166 (source: NCBI BLink).
Link
InterPro Scan - TAIR