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15-1215-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19473588 [Map]; Strand: c
      • AT5G48050.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162);...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-1215-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTC CAATGACCGA GAAAAGATGG AAGGAACGTG 
    ATGGACTTGT GAAGATGTGG ATATATGGCA CCATCACTGA TTCACTTCTT 
    GACACCATCA TCAAAGTAGG GTGCACAGCT CGAGACTTAT GGCTCTCCCT 
    AGAAAATCTC TTCCGTGATA ATAAGGAGGC TCGTGCACTT CAGTTTGAAA 
    ATGAATTGCG TACTACGACG ATCGACGATC TCTCGGTACA TGAGTACTGT 
    CAAAAATTGA AGTCGCTTTC AGACCTTTTG ACAAATGTCG ACTCTCCCAT 
    CTCAGATCGC GTTCTTGTTA TGCATCTACT CAACGGTCTC ACGGAGAAAT 
    ATGATTACAT ACTCAACGTA ATCAAACACA AGTCTCCATT TCCCTCATTC 
    ACTGAAGCTC GCTCAATGTT GCTTATGGAA GAGAGTCGCC TCTCCAACAA 
    AAGCAAGTCT TCCTTGAGCC ACACAAATCA CCCCTCACTA TCGAATGTCT 
    TATTTACCGT CCCCCGCCAG CAAGAACGCT ATCCGCAAGA GTATCACAAC 
    AACAATAGTA ATATGGGACG CGGTCGTAGC AAGAAAAAAA ATCGCGGAGG 
    TGGTAGTAGT GACGGTCGAT ATAACAATAA TAATAATTGG CGACTCAACC 
    AGCCCCCAAC TTGGATTTAC GGNCCTCCTC AATCGCCTTA TATGTATCCT 
    CACGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19473612 [Map]; Strand: c
      • AT5G48050.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162);...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-1215-1 - 3-prime edge 
    TTGANAACAG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    TCGATGTGAC CAAGGACACC AAAACTTAGG CAAAGAGTCT CAAAAAGCTC 
    ACGCCACACA TCGTAGTTCA ACTTATTTAA GTCAAGAGTG ACAAAAATAT 
    AAGCGCGAAT CTGCATGATT CCAAATGATT TTTCGTACGA AGATAGAGTG 
    GTGTCAGCCA TCACAAAACA GAAAGGTGGA AAGAAGAGAA TTAGTAGGTA 
    AGAACAGAAA GACAGACTAC GTTTCACTCA AAACAAAAAA AAAGTTTTAG 
    TTAAGGTTCT TCTGATAATA AGAAACTACN GTGTGTCTCT TCTATTCATT 
    AGGTCATCTA TATATACATG AGTGTANAGA TCTAGGTATA TACCGTATCT 
    CATAATATGT GCAATTTATT CATATATACA CCACTAACAA TTATGAGATG 
    GTTTGAGGAG TCTTAACCAA NTAAATGAAC TATTGAATAG ATTGAAAAAA 
    AAATNTTTAG ANAATATGAA AATTACATAT GNGTNGGATA CTATCCTTAC 
    CCCATNATTA TAGTTCCANA TNNNATCATA TATATNTTGA ACTATNCAAA 
    TACAANANTG AGGTTTTATG ATCCTTANNA AAAAAATACT TANTNTNTCN 
    NAATAAAATA GATNGATTNN GGTNTNNAAA TTAAAAATNT ATNAAATTTT 
    TNAAACANAC CTCTTTNTGN GAANCTTTTT NATAATCNTA NTTANCANGG 
    GATNACNAAA ANCANGGTCN TNCN

AT5G48050.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR