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Mutant Lines
15-1830-1

15-1830-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 1; Position: 30181060 [Map]; Strand: c
- AT1G80270.3 - [+] show detail - PENTATRICOPEPTIDE REPEAT 596
  Distance: 0; Region: intron1 (5UTR)
- AT1G80270.2 - [+] show detail - PENTATRICOPEPTIDE REPEAT 596
  Distance: 0; Region: exon1 (5UTR)
- AT1G80270.1 - [+] show detail - PENTATRICOPEPTIDE REPEAT 596
  Distance: 0; Region: intron1 (5UTR)

ANCCCATCCN ATTNCTTGAN CNNCCTAGCG CATTGTGNGC NAACACGNTA 
ATCCTCTAGC TTCTTNCCTC GGTATTCCTT GTCTAATTCN GAACTTNTCT 
TTNTTTNTTN AAGGNTNCAA NCGTNNCNNG GAANGGCGNA NCNTTNCCTN 
CNACNNANNA ANCCNCCNNC NANTAGNNAA NCNGNAAATN NNANTTNGNN 
NNGGGNANGN ANNCGNATCA GANNNGAAAA GNNNGNNGCA NNNNNGGNGG 
ANCNANTANT NNATNNNGTT CNTAGNNNGG GCNCGCAGNG NCGGCNGNNN 
CCANAANGNN NGNACNGAGN GATGNNNCNN NNAANNGNNA NNNANNNATA 
GNNNGGCNNG ANATNNNNNA NGATGNNAGT NNNNGNNCAN ANTCNACGAN 
TAGTTANTGG NCNANGNCTC NTNANANNNC NNNANACACG NNACAAANTA 
ANNNNGANTG ANATNNGNAG TAGAGNNNAT NTGTNGNNAN GGNNTTANGA 
ACANAGCNAT CACAAGNGNN ANCNNNAANN GTTGNAAANA AGNNNACCGN 
NNGNCANGNN CATGCATNAA GAANGNGNNA TNNATANAGN TANGGGTTNN 
ATNNNNCGGG TCANTNCTAN TAATNGNAAT NANATNACGA GANANANANN 
NANACANANA ANNNTNACNA NTNNCGNGAG TGCTTNAATA GTNCANCTCG 
NAGANCANGT ACCCTGCNAN NGNGAANANA ANNAANANAA NNTNATNNNN 
CNNNNANGCG NANCCCGANN GNNANNTCNT NNNGTGCNNN TNNNCAGANN 
ATNNNGGNGG ACGTNGAT

5 prime edge [+] show sequence

Chromosome: 1; Position: 30180944 [Map]; Strand: c
- AT1G80270.3 - [+] show detail - PENTATRICOPEPTIDE REPEAT 596
  Distance: -10; Region: promoter
- AT1G80270.2 - [+] show detail - PENTATRICOPEPTIDE REPEAT 596
  Distance: -38; Region: promoter
- AT1G80270.1 - [+] show detail - PENTATRICOPEPTIDE REPEAT 596
  Distance: -44; Region: promoter

GATGGGATCT AGAGAGTAGA GAGACTACAA ACACAAAGGG TTTATGAGAC 
AAGTCGAGTG TTAAAGAAAT GTTTTAGGGT TTTACAGTTT TCTTTCTTTT 
GACCATTTTG TCCTCCAACA AGGTTTGCNT TAATTGCATC CATAAATGGG 
CNTTTTCGTA ATAAACTCAT AACCTATAAG GCTATAACCT TAATTATCGT 
CTTTTTGTTT TTGGTTAATG CTTTTTTTTT TNTTTNGCCG NATNGGTNAA 
NGCTNAATAT NTGTNCTATN CNTAGNAGGG NCNCAATNAA ATTTNAAACT 
TTNATNATTN NTNGTNAAAA ANGTNANCAA NGTTTTTTTT TTTTAAACCC 
NNNAANCCNT TTTNNAAAAN NNTTNNNTTA AAAANNGGAA NNTTTTTNAA 
NNAAAAANNC NTTTTNNGGN AATTTNNNCC CCNNCCCCAA AAAANCCTNG 
GGGNTNAAAA ANTNCCNNGG NAANGNGGGG NANAANCCNN NNTTNGNAAA 
NTTTCCCNGN CCCNTNNNNN CNTAAANTTG GNCCCCCNAG GGGNGGNAAA 
ANNGGNCCNN NCCCCNAAAA NNNNTTTTAA NCNCCCNNCC CGGGNCCGNA 
ANNCNCNGGN NCCTNNNAA

AT1G80270.1

Model type: Protein coding
Short Description: PENTATRICOPEPTIDE REPEAT 596
Computational Description: PENTATRICOPEPTIDE REPEAT 596 (PPR596); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G15480.1); Has 12069 Blast hits to 5943 proteins in 220 species: Archae - 0; Bacteria - 13; Metazoa - 132; Fungi - 119; Plants - 11568; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G80270.2

Model type: Protein coding
Short Description: PENTATRICOPEPTIDE REPEAT 596
Computational Description: PENTATRICOPEPTIDE REPEAT 596 (PPR596); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G15480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G80270.3

Model type: Protein coding
Short Description: PENTATRICOPEPTIDE REPEAT 596
Computational Description: PENTATRICOPEPTIDE REPEAT 596 (PPR596); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G15480.1); Has 12069 Blast hits to 5943 proteins in 220 species: Archae - 0; Bacteria - 13; Metazoa - 132; Fungi - 119; Plants - 11568; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).
Link: InterPro Scan - TAIR