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15-2816-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19498885 [Map]; Strand: w
      • AT1G52350.1 - [+] show detail - pre-tRNA
        Distance: -393; Region: promoter
      • AT1G52360.1 - [+] show detail - Coatomer, beta' subunit
        Distance: -277; Region: promoter
      • AT1G52360.2 - [+] show detail - Coatomer, beta' subunit
        Distance: -458; Region: promoter
    Flanking Genome Sequence: 15-2816-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTATAATCT GTGACTTGTG TAAACTTNTC CATTACACTC 
    CCTTNTTTTT TTTNANCCCN NNNNNNCCCC CCAAANNNGN TTTTTNAAGG 
    GGGGGNAAGG AGAAAGGGGG GGAANNNAAG GGGNGGGGGG GGGGGGGNNC 
    TNAACAANGG GNCNGATTAA NCNNANANNG GGGCGGGGAG CCCCCCGGGG 
    NGNNNCGNAT GGGCTCGTGA AAGNCCCAAA AACGGGGGAG GGNAGAAACC 
    AAAANNTTTA NANTCNGGGN GAGGAGNAAA AAACCCNNNA ATTTGANAAA 
    GGGNAAAANG NGCGGTNAAA ANANGNAGGG GGGGGNGAAT TTTAAAAAAA 
    NNNNCAAAAA GAGGGGGGGN NNNNCAANNN CCNNCNNTNN NTGGNGNNGA 
    AGAAGGGGGN GNNCNNNCNG GGNGGGGGNN GAGGGCCNGN NAAAAAAANC 
    CGNNNNCCNN GNGGNGGGNG GGNGGGNGGA GGTANAAANN NTTNGATNGN 
    NGNAAAAAAA TCNNNNGGGG AGGGGNGGGG GGGGGGGGNN AAAAAAAAAC 
    GGGGNNNNCG NGNGGGNGNG NAGACNNANG NGGGGANNCN GNNGAANNNG 
    AGNNNNGGAA NGGAGGGGGG GNGANCNGAC NGNGANNNNA GAANGNNNNN 
    AGNGANATNN ANATNNNGGA GNGGGNGGGA ANGNGNAAAA AANAACACAA 
    CGCGNGGGNG NGGGNCGCGG NTAAANCANN NGCNNGGNNN GAAAAGAGNA 
    AAGTNNGANG GNGNGGGGGT GGNAGAGAAG NNNNNAAGNA NANNNTNNGG 
    GNGNGGGGGN GGCGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19498818 [Map]; Strand: w
      • AT1G52350.1 - [+] show detail - pre-tRNA
        Distance: -326; Region: promoter
      • AT1G52360.1 - [+] show detail - Coatomer, beta' subunit
        Distance: -344; Region: promoter
      • AT1G52360.2 - [+] show detail - Coatomer, beta' subunit
        Distance: -525; Region: promoter
    Flanking Genome Sequence: 15-2816-1 - 3-prime edge 
    AATGGCACTA GGTGGACTTC TTCTCACTAT TGATGAAGCT ATTTCTGATA 
    TTTCATATAT CAGGTTATCA ACATAAAAAA ACTCATTAAG ACTAATCTTT 
    CTTATTAAGT CTTAAATAAT CAAAAGAAGC TCAAAATGTT ACCCTAATCT 
    AGAAAGCCAA AAAAAGATTT TATATTTCAT TTGCCATATA GTTGACTACA 
    AGTTAATGGT AGAGAGAAGA GCATCCACCC CAGTAAATTC CGACGAGATG 
    TACCAATAGA GACATCTGAG AGAGGCAGCC ACCCAAATGT AGAACTTAGC 
    TGGGGTTAAG AACAGAAGTA TTCAATAGTT ATTCTAGGCT ATATTTAAGT 
    ATTTAATATT ACGAGCCATA ACAAATAAGG CCGCATAGCG CAGTGGATTA 
    GCGCGTCTGA CTTCGGATCA GAAGGTCGTG GGTTCGAGTC CCACTGTGGT 
    CGTTTTTTAC CTTTCACTTT TTCTATATTA ATTACCAGCC TTATTAGTGA 
    CTTTATTTAT GACTATTATT TTATTTTTCA CAAAACTACA AACCTTTTTA 
    TNTTGAGAAA AAGTNTNTGA GAAGAACAAN TGACAAATCA TNTGATTAGA 
    TNTTTANAAN GATCTTACTC AAAAAATGTA NATTTTTTTT NGNNNTTTNN 
    NNAANAAAAA NGNNNCNCNG NANGGACTTN NNNNNAAAAN ACCCCCNAAG 
    NNAA

AT1G52350.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Arg (anticodon: TCG)
Link
InterPro Scan - TAIR

AT1G52360.1

Model type
Protein coding
Short Description
Coatomer, beta' subunit
Computational Description
Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), Coatomer, beta' subunit (InterPro:IPR016453), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT3G15980.3); Has 77726 Blast hits to 33438 proteins in 848 species: Archae - 64; Bacteria - 8410; Metazoa - 31451; Fungi - 17403; Plants - 9943; Viruses - 42; Other Eukaryotes - 10413 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G52360.2

Model type
Protein coding
Short Description
Coatomer, beta' subunit
Computational Description
Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT3G15980.3).
Link
InterPro Scan - TAIR