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15-2873-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24983601 [Map]; Strand: w
      • AT5G62190.1 - [+] show detail - DEAD box RNA helicase (PRH75)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 15-2873-1 - 3-prime edge 
    AGAAGAAGAG CAGCAAGAAG GTTAAGTTGG GCGTTGAGGA TGTTGAAGTT 
    GATAACCCTA ATGCTGTTTC TAAGTTTCGG ATTTCTGCGC CGTTGAGGGA 
    GAAGCT

AT5G62190.1

Model type
Protein coding
Short Description
DEAD box RNA helicase (PRH75)
Curator Summary
DEAD/DEAH box RNA helicase PRH75
Computational Description
PRH75; FUNCTIONS IN: DEAD/H-box RNA helicase binding, ATP-dependent helicase activity; INVOLVED IN: RNA metabolic process; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), GUCT (InterPro:IPR012562), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase (RH3) (TAIR:AT5G26742.2); Has 57587 Blast hits to 49572 proteins in 3210 species: Archae - 795; Bacteria - 24538; Metazoa - 10953; Fungi - 6002; Plants - 4052; Viruses - 90; Other Eukaryotes - 11157 (source: NCBI BLink).
Link
InterPro Scan - TAIR