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Mutant Lines
15-3378-1

15-3378-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 7209517 [Map]; Strand: c
- AT1G20750.1 - [+] show detail - RAD3-like DNA-binding helicase protein
  Distance: -519; Region: promoter
- AT1G20760.1 - [+] show detail - Calcium-binding EF hand family protein
  Distance: 0; Region: exon1 (CDS)

CGACCATCTC CGTCTAAATC TGCTCTTTTG AAGTAGGCCT CGAATTGATC 
CATGTTAGGA TTCTGACCCG CCATCTCAAG GATCACCGGA GCTACCCAAA 
AAACTGAGAT TAGAGCNTTA GAAATCGATC AAAATCCTAT CTCCAGATTT 
CTCCAGACGA AAATTGCCCG ATTCGAACAG ATGAAATGAT GAATAATTAA 
CAAAAAAAAA ATCGTNTAAA TGACTGACCC AGCAAAANAT CGAATCGTCT 
TANCNATGGT TTTTTTTTTN TTTTNCCNTT NGNGGGAAAA GGGNCCTTTN 
TGGGCCNANT NANNTTTTTN AAAAAANAAA ANTNANNAAN GGGGCTTTTN 
NAACCCCNTT TTNGCCNANT NNTAANGGGN NCAAANGTTT NGCCGTTTTT 
TTTNANNAAA NAANACCNGN CCGTNNTTTT NNAAATTTNA CNTGGCCAAA 
NANNNNGNAA NNANNGGNAA AAAAGGGTAA NGTTTNCCCC CCCNNTTATT 
TTNANNANCC CAAANTTNTN NAANCNNANT NCCCCNCNTT NNNTNTGGTT 
TTTTTTNCCG CCCCNGATTC CNCNGNTTTA ANNACCGGAA AANGGNTTCC 
CNAAAAANTA AATCGGTTTC NANGGAANAN GNGAACAANC CCTAANCTCC 
AAAAACCCTA AAAAGGTNTN CCAATNGGNN GGCCTTAGGT GNATTACCCC 
CCCGG

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 7209630 [Map]; Strand: c
  - AT1G20750.1 - [+] show detail - RAD3-like DNA-binding helicase protein
    Distance: -632; Region: promoter
  - AT1G20760.1 - [+] show detail - Calcium-binding EF hand family protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 15-3378-1 - 3-prime edge
```
GATCATGGTC GGATCAGTGG TGCCGAAGCT GTTGGATTTT TTCAAGGATC 
TGGTTTGTCT AAGCAGGTTC TCGCCCAGGT GAACATTTCT TCTTGGATCT 
CTCTGCTTTC TGATTGTTTC TCGCTAGAAA GATCTGATTT CGTTTTCTAC 
GCAGCTGATT TGGGTTTCCA AAATGCCGTG ATTTTGATTG TTCCATTTGA 
ATTGCATTCT ATTTCTGAGA TTTTGAATTG CCTATGAACT TAATAAGAAT 
T
```

AT1G20750.1

Model type: Protein coding
Short Description: RAD3-like DNA-binding helicase protein
Computational Description: RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20720.1); Has 2571 Blast hits to 1958 proteins in 520 species: Archae - 146; Bacteria - 396; Metazoa - 797; Fungi - 439; Plants - 210; Viruses - 2; Other Eukaryotes - 581 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G20760.1

Model type: Protein coding
Short Description: Calcium-binding EF hand family protein
Computational Description: Calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G21630.1); Has 12017 Blast hits to 4944 proteins in 443 species: Archae - 20; Bacteria - 3590; Metazoa - 3650; Fungi - 1736; Plants - 412; Viruses - 16; Other Eukaryotes - 2593 (source: NCBI BLink).
Link: InterPro Scan - TAIR