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15-3717-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29441687 [Map]; Strand: w
      • AT1G78240.2 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: -5116; Region: intergenic
      • AT1G78250.1 - [+] show detail - pre-tRNA
        Distance: 2286; Region: intergenic
    Flanking Genome Sequence: 15-3717-1 - 3-prime edge 
    TTCATATGAA CATCAGAACA TGTATCTTTT TACGAGGTAT TGTCACAGTA 
    ATAATAAACC TGGGACATGC ATGTAATTGT CATAACTCGG AAAAGTGATG 
    GAAGCCAAGA CAAAATGACC CATACCATAT TGTCGTCTAG ATC

AT1G78240.2

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Curator Summary
Encodes TSD2 (TUMOROUS SHOOT DEVELOPMENT2), a putative methyltransferase with an essential role in cell adhesion and coordinated plant development.
Computational Description
TUMOROUS SHOOT DEVELOPMENT 2 (TSD2); FUNCTIONS IN: methyltransferase activity; INVOLVED IN: shoot development, homogalacturonan biosynthetic process, response to cytokinin stimulus, root development; LOCATED IN: Golgi apparatus; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: QUASIMODO2 LIKE 1 (TAIR:AT1G13860.3); Has 1228 Blast hits to 1207 proteins in 172 species: Archae - 9; Bacteria - 218; Metazoa - 0; Fungi - 44; Plants - 919; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G78250.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Met (anticodon: CAT)
Link
InterPro Scan - TAIR