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Mutant Lines
15-3898-1

15-3898-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 16568105 [Map]; Strand: w
  - AT2G39720.1 - [+] show detail - RING-H2 finger C2A
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 15-3898-1 - 5-prime edge
```
ATCAGGATGA TAGATGTGAT TACAAGGCAT CTCGCGAGCA GATGATTTCA 
AAACGAAATT CTCTTTGCAA ACAGCGCAAT GAGATTGAGA ATCCGATAAG 
AGATGAGTCG GATCGATTTC AATCAGAGGC AAAGCT
```

3 prime edge [+] show sequence

Chromosome: 2; Position: 16567989 [Map]; Strand: w
- AT2G39720.1 - [+] show detail - RING-H2 finger C2A
  Distance: 0; Region: exon1 (CDS)

ATCCTGATTG TATTCTTCCT TGGCTTGCGA TTCGTAACTC TTGTCCGGTT 
TGCCGTCATG AGCTACCGGC GGAGGATCTC ACCGACGGAA CCGGTGCTGC 
TTTGACTGCT GTTACCGCTA CTGCAGAAGA AGAGGAAGAC TCAGCTGCNG 
GGGTTAACGA TTTGGAGGTT ACCAGGTGGA GGATTCGCTG TAGGGAGAAT 
CCCTGGTGGT TGGAGAGGTG GAGATAGAAT GATGCCGGTG GTTTACACGG 
AGGTTGATGG TGGTAGACTC GGTGATGAGA GACTTCCGAG AAGAGTAGCT 
TGGGGTTCGA GAAGAGGTGG AAGAGATGGT GGAGGTAGTA GAGAGAGAGG 
TGGTGGCTTT GCGGGTCGGA TCATGAGGCT TTTCGGATGT TTTAGTGGAT 
CATCTGGATC

AT2G39720.1

Model type: Protein coding
Short Description: RING-H2 finger C2A
Curator Summary: Encodes a putative RING-H2 finger protein RHC2a.
Computational Description: RING-H2 finger C2A (RHC2A); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G59550.1); Has 8622 Blast hits to 8603 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 2413; Fungi - 807; Plants - 4301; Viruses - 28; Other Eukaryotes - 1073 (source: NCBI BLink).
Link: InterPro Scan - TAIR