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16-0018-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10014163 [Map]; Strand: w
      • AT1G28480.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: -90; Region: promoter
    Flanking Genome Sequence: 16-0018-1 - 5-prime edge 
    GTTTTGTTAT ATATACATGA AGAAAGAGAG ATCAGAGAGG AAAGTCTAGC 
    GTCAACGATG GTTACGTAAG GATATGCGTC ACAGGAAGCT ATGGGTGATG 
    GTGCTTGTTT ACNGTCACNT GGATTGGAGT GGACTTAGTC ATAGGACCGT 
    GTCGTTATAT CGTATCACAT GTTTCACGCT GACTTTTTGT ATCCCACTTT 
    ATTCTTTTAA TAAATCTGCA CGTTTTAATT TTGGTTCCTT TCTACGTACG 
    TGTTGTTACA TAATATTTTA CTGCTTTTTC ATATCTCTTT TTTTGGGGTC 
    AAATTAACAG AATAGTTTAT TACTATAATT TTTGTTGTTT TCGATTGATG 
    GTTTGTAACT TTTTATACTT CNAAATATTC GCTTATGTGA CCACATAGTG 
    GATGCTTCTT TGGATCTCGA CCATCAAAAC GGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10014047 [Map]; Strand: w
      • AT1G28480.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-0018-1 - 3-prime edge 
    AACAAAACCT TCCTTTCCTA NTTGGTNTCT ATCTTTAAAA ACATACTTGA 
    AAATGCAAGG AACGATTTCT TGTGCAAGAA ATTATAACAT GACGACAACC 
    GTCGGGGAAT CTCTGCGGCC GCTATCGCTT AAAACGCAGG GAAACGGCGA 
    GAGAGTNCGG ATGGTGGTGG AGGANAACGC GGTGATTGTG ATTGGACGGA 
    GAGGATGTTG CATGTGTCAT GTGGTGAGGA GGCTGCTTCT TGGACTTGGA 
    GTGAATCCGG CGGTCCTTGA GATTGATGAG GAGAGGGAAG ATGAAGTTTT 
    GAGTGAGTTG GAGAATNTTG NAGTTCAAGG CGGCNGAGGT NCGGNGAAGT 
    NACCGGCGGT TTATGTNNGA GGGAGGNTGN TCGGAGGNTT NTATAGGGNC 
    ATCGCTACTC NTATCTNCCG GTNANCTAGT TTCCATTCTT AAGGAAGCAT 
    GGNGCTCTTG NGGTGGTCGN TTNCNTTTTN TNTCTNTNAN NCNNTCNNTT 
    TCTNTNCACN ANAAACNATT NCNAATNNTN AACNTCGTNC ANNCNNNCTN 
    CANACNNNCA CANAAAACTA CNAACNCGCN CTNCNNNGTT CANNANGANN 
    GNANNNTTNG CCNNCNNNTN TANNNGTNAT NNAANTTATC CCNNGANANN 
    TTNTGTAGNN NGAGNAANNG ACNCTCNGTA NCTAACAAAC GAACANCCNN 
    NNCAGCAANA AANGCANNAT NNNNTCANNT NTCNNNGCCT NNANNNANNA 
    NCACNCNTCG ACNGATT

AT1G28480.1

Model type
Protein coding
Short Description
Thioredoxin superfamily protein
Curator Summary
Encodes GRX480, a member of the glutaredoxin family that regulates protein redox state. GRX480 interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription. GRX480 transcription is SA-inducible and requires NPR1. Maybe involved in SA/JA cross-talk.
Computational Description
GRX480; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: salicylic acid mediated signaling pathway, jasmonic acid mediated signaling pathway, response to salicylic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutaredoxin family protein (TAIR:AT1G03850.2); Has 774 Blast hits to 772 proteins in 85 species: Archae - 0; Bacteria - 6; Metazoa - 52; Fungi - 18; Plants - 684; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR