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16-0287-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8425192 [Map]; Strand: w
      • AT1G23840.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant stru...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-0287-1 - 5-prime edge 
    CCGANAAGTN CNNCTCANAA TTGACTAGGN TGGANANGTA NGNGGAAGCG 
    AGNGNGACAG NGGTNTGGAG GGAGAGCCTC GAAGAAGATC AAGAAACANA 
    ACNGTGGGAG AGAGCAAAGA AAGAGGAAGA GAGCGAGATT GATGTTACCA 
    AAGAGTAGCT NAAGAGCTCG TTTTAGTAGT TCGATGACAC TTAGCTTCTC 
    CTCGCTCTTT GTCTCCATTT GTTGATCTCT TTCTCACAAT AGAAGAAGAG 
    AGGTCACAGA TC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18152951 [Map]; Strand: w
      • AT4G38932.1 - [+] show detail
        Distance: -382; Region: promoter
      • AT4G38940.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 16-0287-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGCTNGNACG GAGAANGATC NNGTNNCTTG NCTGATTANG ACNACNCTGC 
    TNTACGTTGT TTCCCTATNC NATCNTTGAC CTNCTTACNA CCACCTNGAT 
    CGATCGCANC NGTCGATCAG ATGAGCGNTA CACATCNGNG GAAGAGCCAN 
    CTGGGGTCTG CGGNTATTGA GNTANGGAGA TCACCAGCNN GGGCCNTTGA 
    CNACTNCGGT GCCCNTTANA NGAGAAATCA GAAACTCCTG AGATCCTTCT 
    TCCGTTTCAG AAAAGAGAGG CGGTTGTAAA TTTTCAAGAA TTTCTTTTAA 
    CCAATCAAAG ACGACGGCTC GGTTCGGTTC GGTTCGGTAC CGGCTTCTCT 
    TCATTAAGTA AACATCGCAC CGTTTTCAAA ATTTGGCACA GACAACAAAC 
    AACATGCATT CTTAAACATA AATGGCTAAA TATTAGTTTC TCTCTCTTCT 
    CTATCATGTA TCTTTGAGAG AGAGAAACTT TCTACTTTGT TTATAGTTTC 
    TGATCTAAAT CANATC

AT1G23840.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23850.1); Has 53 Blast hits to 48 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38932.1

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G38930
Link
InterPro Scan - TAIR

AT4G38940.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G10510.1); Has 1232 Blast hits to 1193 proteins in 71 species: Archae - 4; Bacteria - 55; Metazoa - 149; Fungi - 0; Plants - 1016; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR