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16-0737-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2209673 [Map]; Strand: w
      • AT5G07120.1 - [+] show detail - sorting nexin 2B
        Distance: -157; Region: promoter
      • AT5G07130.1 - [+] show detail - laccase 13
        Distance: -894; Region: promoter
    Flanking Genome Sequence: 16-0737-1 - 3-prime edge 
    CAAGTAGACC TATAGTCAGG TCGTTTGGAT GCAGAGATAT CTCTACCACA 
    TTTAAGTATA AGAATAATTT GCATATTGGG CTGGGCTGGG CTGCTACGGG 
    TCGGGTCAAA ACCCAGCTAA ACACTTTAAC GTGACCCGAA AGATATTACT 
    CTTTCCATCT CATCTTCCCC AATTAGTTAT TGACGAGACT TGACGCTACT 
    ACATTCAATA TCTGGAGCCA ACACCGCCGT GACTTAGCCA CTCCGCTTAT 
    TTATTGCAGT TCACGACCAC CGTATCCTCG TAATCTCCGT TATCTCGAAC 
    CGAATCGAAA AATCCCTAAA TTCCTGTGAA TTTATTACTA AAATTAGCTC 
    ACCTTATAGA TTTACCAGAG ATGATGGGCT CAGAGAATGA CGAAGAGTCC 
    CATCTCCACT CATCCAAAGA AGAGATGGAG AAACTCTTTC TCCGCGAAGA 
    TGGCGATCCC TTGACCAAAA GCAATGTCAA CGGCGATAAA TCCAACTCTA 
    ATTATCGCAG CGCTATGTCA ACTCTCTTCG ACTCGCGTCA CCCGTCGATT 
    GTCGTAACTC CAGCTGATTC CGATCCACTT TTTGCGCCAC CGTCTTACTA 
    CAGCGAATCT CGGAGTCCTC GTTCTAAACC AAACGGCGGC GACAGAGTCA 
    GCTCTTACCT CGAGCCTCCG TCTTACGCGG ATGTTATCTT CAGCCCTTTC 
    GATGATATCT CCGAGATCAA TGGCTCANAA GATG

AT5G07120.1

Model type
Protein coding
Short Description
sorting nexin 2B
Curator Summary
Encodes sorting nexin SNX2b. SNX2b is peripherally associated with membranes. Involved in vesicular trafficking from endosomes to the vacuole.
Computational Description
sorting nexin 2B (SNX2b); FUNCTIONS IN: phospholipid binding; INVOLVED IN: vesicle-mediated transport, intracellular signaling pathway; LOCATED IN: membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Vps5 C-terminal (InterPro:IPR015404), Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: sorting nexin 2A (TAIR:AT5G58440.1); Has 2399 Blast hits to 2386 proteins in 279 species: Archae - 13; Bacteria - 100; Metazoa - 1366; Fungi - 555; Plants - 146; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G07130.1

Model type
Protein coding
Short Description
laccase 13
Curator Summary
putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
Computational Description
laccase 13 (LAC13); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 3 (TAIR:AT2G30210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR