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16-0794-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10013184 [Map]; Strand: c
      • AT1G28470.1 - [+] show detail - NAC domain containing protein 10
        Distance: 986; Region: intergenic
      • AT1G28480.1 - [+] show detail - Thioredoxin superfamily protein
        Distance: 290; Region: intergenic
    Flanking Genome Sequence: 16-0794-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTGG TAGTTTATCA GATTTGAATA TTCACAAATG
    CCAAAATATG AGAGATCCTT TAGATTGAGG TGAAAAATGT GGGAGGGATG
    GAAGATATCA CCTCCAATTG GTATGTTTCC ACTATGATGC ACAAAGTGGA
    GACCNGCGCG GCAAAAAGTG GAGACCAATG AAACGTTAAC CTTTAGAGCT
    GGAAGCATTT TACTGCTGGC CCGAGCCATA AACGGCAAAG AGCATAGAAC
    CCTCAATTAC AGACACCACC CAAGTCACAT GCAAGCGGTT CTTCGAACTT
    AACCATGAGC TTTATCAGAA CGGAACTACA AAAACCCGAG TATACGATAG
    CGGTAGTTCA CTCTAACAAG CGCATTTCCC GCGGTCAGCT AGCACAAAAC
    AAGATATCAA CGATACACAA TAACGCTGTA AAGATCTAAC TTCACTTCAA
    TCTCACAAAC ACACGAATCA ACTTCAGCAC TAAGAATCGA ATTGATCAGA
    ACTGAAAGAA AGTAAAAGAA AAGCTGAACA CAGAGAATTT AACGAGTTCA
    CGTTCCAAAC CGGAACGCTN CGTNTCGCCG GAGAAACCTC TCCGGAAATC
    CACTANAACT TGGAAACNTN ANNCTNTGTT ACAATGCTTT NANNCTNNNN
    NNNNNGNCCN NNNNCCNCCC CCNCCNNNNN GGGGGGGGGG GNNTTNTTTN
    NACCCCCCCC CCCCNC
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10057170 [Map]; Strand: w
      • AT1G28620.1 - [+] show detail - pseudogene, lipase, similar to lipase Arab-1 GB:S68410 GI:2129636 (Arabidopsi...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 16-0794-1 - 3-prime edge
    ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCT 
    TCTTTACTTG TTTTCAAGAT TGCAGAGAGA TTCTCGAAAA CTCGCTGTTT
    ATTGTTGGTG AGATTGGAGG TAATGACTAT AACTACGGAT TCTTGATTGG
    AAAAAGCATC CCGGAGATTA AAAAAAATAG TCCCCCTTGT TATCAATGCT
    ATTTGCTCAA CAATTGTGGT AATAAAAATC TTTCTTAAAT CCNGTNCNNN
    GNCCCTNCCC NNNTCCTNNN NTTGTNTGGG AGACTAANAA TTGAACCTTG
    CAAGCATGAA CAACATGGTA CAGGAATTGT TCAATTTGGG AGCCAGAACG
    TTTCTAGTGC CAGGAAAGTT TCCAACTGGA TGTTCTGCTG CATATTTAAC
    GAGATTTAGG ACAACAGATA TGAAGGACTA CGATGCTTTA ACCGGATGTT
    TGAAGTG

AT1G28470.1

Model type
Protein coding
Short Description
NAC domain containing protein 10
Computational Description
NAC domain containing protein 10 (NAC010); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 73 (TAIR:AT4G28500.1); Has 2334 Blast hits to 2329 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2334; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G28480.1

Model type
Protein coding
Short Description
Thioredoxin superfamily protein
Curator Summary
Encodes GRX480, a member of the glutaredoxin family that regulates protein redox state. GRX480 interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription. GRX480 transcription is SA-inducible and requires NPR1. Maybe involved in SA/JA cross-talk.
Computational Description
GRX480; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: salicylic acid mediated signaling pathway, jasmonic acid mediated signaling pathway, response to salicylic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutaredoxin family protein (TAIR:AT1G03850.2); Has 774 Blast hits to 772 proteins in 85 species: Archae - 0; Bacteria - 6; Metazoa - 52; Fungi - 18; Plants - 684; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G28620.1

Model type
Pseudogene
Computational Description
pseudogene, lipase, similar to lipase Arab-1 GB:S68410 GI:2129636 (Arabidopsis thaliana); blastp match of 44% identity and 1.2e-48 P-value to GP|7523500|dbj|BAA94228.1||AP001633 unnamed protein product {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR